The detailed information of tRNA gene sequence


Sequence ID>CHL1899111447
Genome IDKY679303
Search identical group
Phylum/ClassViridiplantae
SpeciesViscum coloratum (KY679303)
Start position on genome 112211
End posion on genome 111259
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcacgac
tRNA gene sequence 
GGGCGATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggta
Secondary structure (Cloverleaf model)
>CHL1899111447	Ile	GAT
                   c      Agct gcgccaggta
                     G - C
                     G - C
                     G - C
                     C - G
                     G   G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=881 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACGATAGTTCCATGTGCTCATCAGCGCCTGAC
CCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCGCGAGGTTTGAAACCAAACTTTTC
CTCAGGAGGATAGATGATGCGATTCAGGTGAGATCCAATAATGTAGATCCAACTTTCTATTCACTCGTGG
GATCCGGGCGGTCCGGGAGGACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTGTATG
GGCTGCTATCTCTCGAGCAGTTGAGGTTCGGCCTCAATGGCAAAATCAAATGGAGCACCTAAAAACGCAT
CTTCACAGACCAAGAACTACGAGATCACCCCTTTTATCATTCTGGGGTGACGGATGGATCGTACCATTCG
AGCCTTTTTTTCATGCTTTTCCGGGGGGGTCTGGATACGTAATCAAAAGGAATCACATGAAATTATTTTT
TTCCTTTAGCAGGAGATTGGATCTAGTCGTAAGAAGAATGCTTGGTATAAAGAACTTACTTCTTGGGGTC
TTCGACCCTCTTCTCAGTCACTACGAGCGCCCCCGATCAGTGAATGGGATGTGTCTATTTCTCTATCTCT
TGACTCGAAGGGAGCAGGTTTGAAAAAGGATCTTCGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAAG
GTTACGCCTTCTTTCTCTTCTCATCATCGGACTTCTTTCACAAAGACTTGAGTAAGAGAAGGGGGAGCAC
ACTTGGAGAGCGCAGTACAAGGATAGAGTTGTATGCTGCGTTCGGGAAGGAGGAATCGCTCCCGAAAAGG
AATCGATTGATTCTTGACCATAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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