The detailed information of tRNA gene sequence


Sequence ID>CHL1899111651
Genome IDKY820583
Search identical group
Phylum/ClassViridiplantae
SpeciesPassiflora cincinnata UFV (KY820583)
Start position on genome 102601
End posion on genome 103473
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899111651	Ala	TGC
                   g      Aact cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=800 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACCATAGTTGGAGTCGGCGGCTCTCCTAGGGATCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCCCCCTTCAACCCTTTAGCGAAATGCGACAAAAGGAAGGAA
AATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCA
TCCAGGGGTCGCGGACCGACCATAGAACCCCGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCAGGT
TGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTGGG
GCGGAAAAGGGGGGTGCTCCCCGTTCCTGGTTTTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCCTT
AGTGAAAATTGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTA
CGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCCATGGTAGAATCAGTC
GGGGGGCCCGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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