The detailed information of tRNA gene sequence


Sequence ID>CHL1899111936
Genome IDLC085348
Search identical group
Phylum/ClassViridiplantae
SpeciesVanilla aphylla (LC085348)
Start position on genome 133862
End posion on genome 132794
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccacacgac
tRNA gene sequence 
GGGCTATTAGCTCAGCGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgtcaggga
Secondary structure (Cloverleaf model)
>CHL1899111936	Ile	GAT
                   c      Agct gcgtcaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      C     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=997 (in A-loop)
ATTGCGTCGTTGCGCCTGGGCTGTGAGGGCTCTCAGCTACATGGATAGTTCAATGTGCCCATCGGCGCCT
GACCCGTAGATGTGGATCATCCAAGGCACATGAGCATGGCGTACTCCTCCTGTTCGAATCAAAGTTTGAA
ACCAAACTTCTCTTCAGTTTGAAACCAAACTTCTCTTCAGTAGGATAGATGGAGCGATTCGGGTGAGATC
CAATGGAGATCGAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGACCGGCTACTCTCTTCTC
GAAAATCCATACGCCCCTTATCAGTGTATGGACAGCTATATTTCGAGCACAGGTTGAGGTTCGGCCTCAA
TGGGGAAATGGAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCGCGCCTTTAATTCTGG
GGCGACGGAGGGATCGTATCATTCAAGCCTTTATTTTCATGCTTTTACCGGAGGTCTGAAGAAAGCAGAA
ATTCATAGGATTTCCTGAATCCTCCCTTCCCGAAAAAGGAAAAACGTGAAATTATTTTTCCTCTCCGCAG
GGACCGGGAGATTGGATCTAGTCCATAAGAAGAATGCTTGGTCATAAGAAGAATGCTTCGTATAAAGACT
TCTTGGTTTTTTTGACCCCCTCTGGGAGCTACCCGATCAGTGCAATGAGACGTGTCGTCTATTTCTATTT
CGATTTCTCTATCTCTTGCTCTTGACTCGAAATGAGAGTAGGTTTGAAAAAGGATCTTAGAGTGTCTAGG
GTTGGGTAGGGAGGGTTCATTCCTTAACGCCTTCTTTTTTCTTCCCCCCATCGGAGTTCTTTCACAAAGA
CTTGCCATGGTAAGGGAGAAGGGGGAACAAGCACACTTGAAGAGCGCAGTAGAATGAAGAGTTGTATGCT
GCGTTCGGGAAGGATGAATCGCTCCCGAAAAAGAATCTATTGATTCTATCCCAATTGGTTGGATCGTCGA
CGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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