The detailed information of tRNA gene sequence


Sequence ID>CHL1899112294
Genome IDLC375846
Search identical group
Phylum/ClassViridiplantae
SpeciesSisymbrium irio J04 (LC375846)
Start position on genome 135462
End posion on genome 134582
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAATC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL1899112294	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T A
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=809 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGAGTTTGAA
ACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGAGGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCC
TTATCAGTGTATGGACAGCTATCTCTCGAGCGCAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGA
GCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCACCCCTTTCATTCTGGGGTGACGGAGGG
ATCGTACCGTTCGAGCCTTTTTTTCATGCTTTTCCCGGGGGTCTGGAGAAAGCTGCAATCAATAGGATTT
TCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCCTCGAAATGGGAGCAGG
TTTGAAAAAGGATCTTAGAGTGTCTAGGGTTAGGCCAGTAGGGTCTCTTAACGCCCTCTTTTTTCTTCTC
ATCGAAGTTATTTCACAAATACTTCCTATGGTAAGGAAGAGGGGGGGAACAAGCACACTTGGAGAGCGCA
GTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTC
TCCCAATTGGTTGGACCATAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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