The detailed information of tRNA gene sequence


Sequence ID>CHL1899113696
Genome IDMF795085
Search identical group
Phylum/ClassViridiplantae
SpeciesLarix sibirica (MF795085)
Start position on genome 56839
End posion on genome 57686
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cccgggtacg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgatccta
Secondary structure (Cloverleaf model)
>CHL1899113696	Ala	TGC
                   g      Agcc cgtgatccta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=775 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTGATCGTCTAGGCGGTAATGATAGTATCTTTTACCCGAA
CCGGTGGCTTACTTTTTCTCAGTAATGGGGAATAGGACCGAAACATGCCACTGAAAAACTCTACAGAGAC
AAAGATAGGCTGTCAAGAACGTAGAGAAGGTAGAGTGGGTAGTTGGTTAGATCTAGTATGGATCGTACAT
GGGCGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTACCTCATCTGAGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGTACTATCTCCCTTCAACCCTTCGAGCAAAATGTGGTAAAAGGAAAAG
CCATGCCATGGACCGACCCCATCTTCTCCACCCCGTAGGAACTACGAGATCGCCCCAAGGATGCCGAAGG
CATCCAGGGGTCACAGACCGACCATATACCCACCCTGATTCGAGGAGTGGAACGCATTAGCTGTCCCCTC
CGGTTGGACAGGAAGGGTCGGAGAAGGGCAATCATTCTTAGGACCAAAGAGTCGGGCGGAAAAAGGGGAG
AGCTCCCCGTTCCTGGTTCTCTTGTAGCTGGATAGCCCAGAACTACAAGAATCCCCGAAATGGGATTTCA
ACTCAGCACCTTTTGGGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTGAGCTGTGTTCGG
GGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGAGGCCTGAGAGACGGTGGTTTA
CCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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