The detailed information of tRNA gene sequence


Sequence ID>CHL1899114616
Genome IDMG523859
Search identical group
Phylum/ClassViridiplantae
SpeciesRosa chinensis var. spontanea (MG523859)
Start position on genome 105143
End posion on genome 106027
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgcgaattta
Secondary structure (Cloverleaf model)
>CHL1899114616	Ala	TGC
                   g      Aact cgcgaattta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=812 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAAAA
AAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGC
ATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGCGGACCGCATTAGCTGTCCGCTTTCAGG
TTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCG
GGTGTAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTAGATCCTCCGGAACCACAAGAATC
CTTAGTTAGAATGGGATTCCAACTCAGCACCTTTCCTTTTTTTTTGAGATTTTGAGAAGAGTTGCTCTTT
GGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTCGGCCTCTAT
GGTAGAATCAGTCGGGGGCCTGAGAGGCGGTAGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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