The detailed information of tRNA gene sequence


Sequence ID>R05100154
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 20682445
End posion on genome 20682369
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
aaaagtactaaaggcgaagggcattctgttgtacagctactttggtatagttacaaaggtaaccggtaggtgactgttgaatcgacagtagttacgaaag
tRNA gene sequence 
GGGGAAATAGCTCAGTTGGTTAGAGTGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAA
CCCCGTTTTCCCCGCCC
Downstream region at tRNA end position 
gatcttcctcttcctgcctgactcattttgtcttcactggaagctgctgatcccagcgtagcattcaagacaattgttccttcttcggtctccccctcca
Secondary structure (Cloverleaf model)
>R05100154	Asp	GTC
                   g      GCCC gatcttcctcttcctgcctgactcattttgtcttcactggaagctgctgatcccagcgtagcattcaagacaattgttccttcttcggtctccccctcca
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     A - T          C A
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T C G       G C G G G     C
    G       | | | +                 T T
    G       G A G T
      T T A        G     AAGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    T + G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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