The detailed information of tRNA gene sequence


Sequence ID>R05900013
Genome IDAP008218
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr12
Start position on genome 11295690
End posion on genome 11295016
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ttggtatgttattatagtaaacagatcaaaggatatcctctactattagagaatattcatcttgacaagaaattctctatatattaagatatctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGAGAAGGTCTACGGTTCGAA
TCCGTATAGCCCTAATA
Downstream region at tRNA end position 
tgtccttttttagattttaggagagatatcctacgtttcctttagtatagttttcatttccctattagtacttgtttatagactggacaggcgcctgcgc
Secondary structure (Cloverleaf model)
>R05900013	Val	TAC
                   a      AATA tgtccttttttagattttaggagagatatcctacgtttcctttagtatagttttcatttccctattagtacttgtttatagactggacaggcgcctgcgc
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    A   A
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=598 (in A-loop)
GTGCGCCAATGCTTTTCATGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAATGTC
TTACTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTA
CCAATCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCAC
TAAATGCTAGGCTTAATGAGGATAAGGGCCTCCAAAAAAATTCTTTTCGTTCTATGAACTTTAAGGTGTA
TGAAGTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAG
GCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCATA
ATACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGACT
AACTGATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGTT
CGAATCATTTCGATAATAATCCGTTTGATCTGTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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