The detailed information of tRNA gene sequence


Sequence ID>R05900021
Genome IDAP008208
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr02
Start position on genome 34706541
End posion on genome 34706361
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tatatccggttttgcggttcgaggacgtttttgtatcccgatgacaagttgagggaccttcggcgcactttttccctagaaaaatggattgatattgggc
tRNA gene sequence 
CAGGATATAGGAAATGGGCCGATTTCCCGTTGTTTTCGGCAGCGGTGGAGGGGGCTCGAG
CCCCCCTACCCTGCTGG
Downstream region at tRNA end position 
actccatggaaatgtgagggaggagaggagggaaaagagggagaggaagaagaaaatggggggagagagggggctggaggaggaagaagaaggctgagcc
Secondary structure (Cloverleaf model)
>R05900021	Glu	TTC
                   c      CTGG actccatggaaatgtgagggaggagaggagggaaaagagggagaggaagaagaaaatggggggagagagggggctggaggaggaagaagaaggctgagcc
                     C - G
                     A - T
                     G - C
                     G - C
                     A   C
                     T - A
                     A - T          C G
                    T     C C C C C     A
      G T A        A      | | | | |     G
    G       A A G G       G G G G G     C
    G       | | + |                 C T
    C       T T T C
      C G A        C     GTGGA
                    C - G
                    G - C
                    T + G
                    T - A
                    G - C
                  T       G
                  T       G *
                    T T C
intron: position=38, length=104 (in A-loop)
CCACACTTAATTCAGTGTTGTGCGTGCGTTGAGGGAATAAGTTCACTTTAAGCCCTTCGTCTTTGACGTG
TTTGAATTGTGTATTGGTGTACCTGAGATCCTAG
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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