The detailed information of tRNA gene sequence


Sequence ID>R05900032
Genome IDAP008210
Search identical group
Phylum/ClassPlant
SpeciesOryza sativa Japonica Group
Chromosome chr04
Start position on genome 9154084
End posion on genome 9156647
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ctttcttttaatgtcttgctattttaagattttgacaggggtgtgcggtgtaattccattgatttttggatttcgatcgtatctaagatcctagtttatT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATAT
Downstream region at tRNA end position 
gaaactagaaaggagcaatctgagttttgatttttcactcacttcatttacaaaattttttggtttggtaaattttgttgtatggatatacaactgtcgg
Secondary structure (Cloverleaf model)
>R05900032	Lys	TTT
                   T      ATAT gaaactagaaaggagcaatctgagttttgatttttcactcacttcatttacaaaattttttggtttggtaaattttgttgtatggatatacaactgtcgg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2487 (in A-loop)
GTGCGACTATGATCTTTTACACATTTGGATGAAGCAAAAAATTCGTCCAGACTCTTGGTAGAGTCTATAA
GACCGCGACTGATCCTCAAGGGTAATGAATGGAAAAAATAGCATGTCGTAATAAAATCAATTTCTTATTT
TGGATTTTTGGAATGGAATAAAAAAATTCTGATTTTCTGGGTCTAATGAATAAATGGATAGAGCCCGGCT
CCAATTCTGGTAAAACAAAAAGCAACGAGCTTAACTTCTTAATTGGAAGAACTCCCTGATCTAATTAGAC
GTTAAAAATAGATTAGTGCCTGATGTAGGGAAAAGCTGGTTTTCCTATGAGTAGACCTTTGATTTTTTCT
TTTTTTTTTAGAAATCCTAATTATTCTTGATTTTGGATTGAAAAGGATGTTATGGATTGAATGTGTAAAA
GAAGCAGTATATTGATAAAGAGACTGTATCCCAAAGTCAAAAGAGCAATTGGCCTGCAAAAATAAAGGAT
TTGTTCTCTTTTGTAATTAGAACAAACATAAACAAATTGGATAGAAAAGGAGCGGAAAAAGATCCGTGGA
TTAGACTCCTTTTCTTCCCCAGGGGTTTGTATTAAAAAATGCAACACCCTGTTCTGACCATATTGTACTA
TGTATCACCATTTGATAAACCGAGAAATATTTCTCTCTCTCTGATTCAAGTAGAAATACAAATGGAAAAA
TTCGAGGGTTATTCAGAAAAACTTAAATTTCCTAGACAATATTTCGTCTACCCACTACTCTTTCAGGAGT
ACATTTATGTGTTTGCCCATGATTATGGATTAAATGGTTCCGAACTTGTCGAAATTATTGGTTCTAATAA
CAAGAAATTTAGTTCACTACTTGTGAAACGGTTAATGATTCGAATGTATCAGCAGAATTTTTGGATTAAT
TTGGTTAATCATCCTAACCAAGATCGATTATTGGATTACAACAATTTTTTTTATTCTGAGTTTTATTCTC
AGATTCTATCTGAGGGGTTTGCGATCGTTGTAGAAATCCCATTCTCGCTACGAGAACAGTCTTGTCCGGA
AGAAAAAGAAATACCAAAGTTTCAGAATTTACGATCTATTCATTCAATATTTCCTTTTTTAGAAGACAAA
TTTTTGCACTTACATTATCTAGCACATATAGAAATACCCTATCCTATCCATTTGGATATCTTGCTTCAAC
TCCTTCAATACCGGATCCAAGATGTTCCATCCTTGCATTTATTGCGATTCTTTCTCAACTACTACTCGAA
TTGGAATAGTTTTATTACTTCAATGAAATCCATTTTTATTTTGAAAAAAGAAAATAAAAGACTATTTCGG
TTCCTATATAACTCTTATGTATCAGAATATGAATTTTTCTTGTTGTTTCTTCGTAAACAATCTTCTTGCT
TGCGATTAACTTCTTCCGGAACCTTTCTGGAACGAATCATCTTTTCTAGGAAGATGGAACATTTTGGGTT
AATGTACCCTGCTTTTTTTCGGAAAACCATATGGTTCGTTATGGATCCCCTTATGCATTATGTTCGATAT
CAAGGAAAGGCAATTCTTGCATCAAAAGGAACTCCTCTTTTGAAGAAGAAATGGAAATGTTACCTTGTCC
GTTTGTGGCAATATTCTTTCTCTTTTTGGACTCAACCGCAAAGGATCCATCTAAACCAATTAGAAAACTC
TTGCTTCGATTTTCTGGGGTACTTTTCAAGTGTACCAATAAATTCTTTGTTAGTAAGGAATCAAATGCTG
GAGAATTCATTTCTAATAGATACTCAAATGAAAAAATTCGATACCAAAGTCCCTGTTACTACTCTCATTG
GATCTTTAGCAAAAGCCCAATTTTGTACTGGATCGGGGCATCCTATTAGTAAACCAATTTGGACCGATTT
ATCGGATTGGGATATTCTTGATCGGTTTGGTCGGATATGTAGAAATCTTTTTCATTATCACAGTGGATCT
TCAAAAAAGAAGACTTTGTATCGACTAAAGTATATACTTCGACTTTCATGCGCTAGAACTTTAGCTCGTA
AACATAAAAGCACGGTACGAGCTTTTATGCAATGGTTGGGTTCGGTATTTTTAGAAGAATTTTTTACGGA
AGAAGAGCAAGTTTTTTCTTTGATGTTCGCCAAAACAACTTACTTTTCTTTCCGTGGATCGCACAGTGAG
CGTATTTGGTATTTGGATATTCTCCGTATCAATGATCTGGTGAATCCTCTTAATTAATCATTAAACAAAA
CTAATAAACTAGAAATGATTGATAAATGATCAAGGGAAAACTTTCACAGTTTCCATTCTGAAATGTTCTC
TGTACTATAATAAATAGTAAGTGAATCAACTTACTACTAAAAAAATTAGTAGACTTCCTCTTCGGAATAG
AAATAGCCTATTTCTACATAGGGAAAGTCGTGTGCAATGAAAAATGCAAGCACGATTTGGGGAGAGGTTT
TTTCTCTATTGTAACAAGGAATAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[RAP-DB]

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