The detailed information of tRNA gene sequence


Sequence ID>CHL090800004
Genome IDAB086179
Search identical group
Phylum/ClassViridiplantae
SpeciesAnthoceros formosae
Start position on genome 28753
End posion on genome 31380
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
atttcattcT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTCAACCGACGAGCTCCGGGTTCGAGCC
CCGGGCAACCCAatt
Downstream region at tRNA end position 
attaaataga
Secondary structure (Cloverleaf model)
>CHL090800004	Glu	TTC
                   T      Aatt attaaataga
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          C G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     GAGCT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T C
intron: position=39, length=2554 (in A-loop)
GTGCGACTAAAGGATTTTAAACATTTAGATGGAGTAAAAATTCCATCCATACCATTGGCAAGGTTTGTAG
GACTACGACTAATTATTGAGGGAAACTCGATACAAAAAACAGCATGTCGTTTCATATTTATTTTGTGATT
AAATTCGATAAAGTTAAAGTATTACTAGAAACTAGAAAAAGAAAAAAAAAAGAAGAAATGATAGAATTAA
CTTTCATTCGATGTAATATTAAAAGATAGAATAGTATAACATTAAAAAAGAAAAATAAATGACTATTGAA
TAAATAGAGTCAAGGTGCTGAAGAGTTAATGGATAAAGCTAAGTGGCTTGAATCATAAATAAAAACCAGA
GAAACGAGCTTCTGTTCAAAAACCTGCATTTTGAATTTCTTTTACTAACTAGAGGTTAAAAGCTATTTAG
TAGCCAATACAATAAAAAAGAGGTTTATTCCTATTCATTAAGTATAAATAGGTTTTTTGATTAAAAATGA
ATCCTAAATACTCATACATTTGTTAAGAATTACAAGTTTGCTGACTGAATAAAATAGTTTGTAAGTCAGA
AGAGCAATCGGTTATCAAGAAAAAACTTCTTTCTTTTTTTCCCTCCTATCTTTCTCCACTTGAATTTAGT
TTCATCTAAAGAAGAAAATGTTTTTTTTATAAGAGAATTCTATTGACAAAATTTTAGTATTTCTAAATCT
AGTAATAGAATTTCCTTGTTTAATCCCTATTTGATTTTTCATAGATTGCACTATGTATCATCTCATATTT
CAAAACGTTGCTCCTATGAGAACTATAGCTAAGATTTCATTAAAGATTGAGGAACTACAAGGAATAAGTG
AGGAAATTTCAAGACAGAAACGTTTCTTATATCCACTTTTATTCTAAGATGATCCTTACGCAATTGCTTA
TAATTGTTCTCCAAATGAATTAACTTTAAAGAAGAGACAAAATTTCATTTTAGAAAATACCAAAAACAGT
TTCAGTTTTTTATCCATGAAACGCTTAATTAGAAAAATACGTGAACAAAACTTTTTGGATCTTTCTACGA
ATCGCAATCAGAATTCATTTCTTGGTTACAACATTAATCCTTATTTAAAATCAATACAAAAGAGTTTGAC
CATAATTTTGGAAATGTTTTTCCCAGTTTCATTGTAATTATTGCTGAGAAGGAAACGGAATAGTTCTTGA
TTCATTCATGTCATATCTTCCTCCATAGAAGAAAATTCTTTACATTCGAATTGTATTTCAGATACTATGA
TACCTTACTTACTTTCTCCAGAAATATTTATTCGAATTTTTCGTAGACGAGTCTAAGATGCTTCTTTTCT
ATACTTCACACGGTTAATTCTTCATAAGTATCGAAATCCAATTCTCTTAGATAAATCTATTTCAAATTCT
TCAAAAGAAATAACTAGATTATCTTCTTCTCCTTGGAATTTATTCTTCTATGAATTCGAATTTCCCTTAA
TAACTTTGTGGAACCAAATTTATGATTTTAAATCGTTACTGTATTGGACTTCACCTGATCAAAATCATTT
TAGAGAGAAGATGAAATATCTTATGAAGTCATCATGGATTTCATTATCAAGGAAAAACTTCTCGAAGAAT
TCTTCCTTTCATTATGTAAGATATGAAAATATTTTTATTATAGCTTCAAGAGATACTATCTATTTAAATA
AGAAGTGGAACCAATATTTCCTCCAAATTTGGCAATATTACTCTCATTTTTGGTTTGAACCACATAGGGT
TATTTTCAAAAAATTATTGGAACATCGTTTCTCTCTTCTAGGTTATACCTCCAATGTTAAACCTTTAAAC
ATTACAATTGAAGCTAGAATGTTAAAAGAATTACCTAGTACTTATATTTCCACTCGAGAATTTTGTCCGA
CAGTTCCCATAATACCTTTGATTGGACTTTTAGCGAATGAAAAATTCCGTAATACTTTAGGACATCCAAT
TGGTAAATTATCGTGGACTACTCTGACAGATGATGAAATTTTTAACCGATTTAACCAGATTCGAAAAAAA
CTTTTACATTATTACAGTGGATGTTTAAATAGAAATGACTTATATTGAGTACAATATATACTTTGATTTT
CATGTGCTAAAACTTCAGCTTGTAAACATAAAAGTACGATACGTTTTATATGGAAGAAATATAGTTTAAG
ATTATTATCGAAACTTTATTTTTCGAAAATAAAATCAAATCATTTTCCTTTTCATCAAATTAATACGAGA
AAAAAGAGAAATTGGTATTTAGACATTATTCAAATGAGTTTTTTGGCAAATCTATTAGAAGGAGAAAGGC
ATAGCAAAAGATAAATGGATTTATAAACGACTTATAAGTTATAAGCAATTGCAAAAAAAATTTGGAAATG
TTTCTTATGAGAAAAAGAAAACTTATTCTGAAATAGATGAAAACCTATTCTGAAATAAGTATTCTGAAAT
AGATATATAGAGAGAGCCGTGTGCTATGAAAAGAGCAAGCACGGTTTGGGAAGAGGTTTTTTATTTCTTT
TCCACCTAGAAAAGATTAATCTATCTACTTTCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK