The detailed information of tRNA gene sequence


Sequence ID>CHL090800006
Genome IDAB237912
Search identical group
Phylum/ClassViridiplantae
SpeciesNicotiana sylvestris
Start position on genome 4409
End posion on genome 1811
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
gcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800006	Lys	TTT
                   c      ACta gcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2526 (in A-loop)
GTGCGGCTAGTCTCTTTTACACATATGGATGAAGTGAGGGATTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCACGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAGAA
TATTTCATTGTTCCTAGATGGGTATAAAACCGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAGGGCTGCGGCTTCAATTAAATTATAGGGAAAGAAAGAAAAAGCAACGAGCTT
TTGTTCTTAATTTGAATGATTCCCGATCTAATTAGACGTTAAAAATTTATTAGTGCCTGATGCGGGAAGG
GTTTCTTGTCCCATGAGTGGATTCTCCATTTTTTTAATGAATCCTAACTATTACCATTTTCTATTACGGA
GATGTGTGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTT
GAAAAAATAAAGGATTTCTAACCATCTTATTATCCTATAACACTATAACATAGACCAATTAAACGAAACG
AAAAAAAAAAGAGATGATAGAGAATCCGTTGAGAAGTTTACCTGTATCCAAGGTATCTATTCTTACTAAA
ATACTTTGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCGTCTTTGGTTCAA
ATCGAATTTCAAATGGAAGAAATCCAAAGATATTTACAGCCAGATAGATCGCAACAACACAACTTCCTAT
ATCCACTTATCTTTCAGGAGTATATTTATGCACTTGCTCATGATCATGGTTTAAATAGAAATAGGTCGAT
TTTGTTGGAAAATCCAGGTTATAACAATAAATTAAGTTTCCTAATTGTGAAACGTTTAATTACTCGAATG
TATCAACAGAATCATTTTCTTATTTCTACTAATGATTCTAACAAAAATTCATTTTTGGGGTGCAACAAGA
GTTTGTATTCTCAAATGATATCAGAGGGATTTGCGTTTATTGTGGAAATTCCGTTTTCTCTACGATTAAT
ATCTTCTTTATCTTCTTTCGAAGGCAAAAAGATTTTTAAATCTTATAATTTACGATCAATTCATTCAACA
TTTCCTTTTTTAGAGGACAATTTTTCACATCTAAATTATGTATTAGATATACTAATACCCTACCCTGTTC
ATCTGGAAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATT
CTTTCTCCATGAATTTTGGAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAA
AAAAATCAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGCGAATCCACTTTCGTCTTTC
TACGGAACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGG
AAAAATAGAACGTCTTGTAGAAGTCTTTGCTAAGGATTTTCAGGTTACCCTATGGTTATTCAAGGATCCT
TTCATGCATTATGTTAGGTATCAAGGAAAATCCATTCTGGCTTCAAAAGGGACGTTTCTTTTGATGAATA
AATGGAAATTTTACCTTGTCAATTTTTGGCAATGTCATTGTTCTCTGTGCTTTCACACAGGAAGGATCCA
TATAAACCAATTATCCAATCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATCCTTCA
ATGGTACGTAGTCAAATGTTAGAAAATTCATTTCTAATCAATAATGCAATTAAGAAGTTCGATACCCTTG
TTCCAATTATTCCTTTGATTGGATCATTAGCTAAAGCAAACTTTTGTACCGTATTAGGGCATCCCATTAG
TAAACCGGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAGAAATCTT
TTTCATTATTATAGCGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTT
GTGCTAGAACTTTAGCTCGGAAACACAAAAGTACTGTACGCACTTTTTTGAAAAGATCGGGCTCGGAATT
ATTGGAAGAATTCTTAACGTCGGAAGAACAAGTTCTTTCTTTGACCTTCCCACGAGCTTCTTCTAGTTTG
TGGGGAGTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTATCAAT
GATTCATTCTTAGATTTTCTAAATGGAAATTTGTTTCTAAATGATGAAGAGATAAAAAAATTTCACTATT
CTGAAATGTTGATTGTAATAGTAATTAAGGGGTAAATCAACTGAGTATTCAACTTTTTAAAGTCTTTCTA
ATTTCTATAAGAAAGGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTT
GGGGAGGGGTCTTTACTTGTTTATTTAATTTAAGATTAACATTTATTTTATTTAACAAGGAACTTATCTA
CTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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