The detailed information of tRNA gene sequence


Sequence ID>CHL090800008
Genome IDAB240139
Search identical group
Phylum/ClassViridiplantae
SpeciesNicotiana tomentosiformis
Start position on genome 4381
End posion on genome 1783
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
gcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800008	Lys	TTT
                   c      ACta gcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2526 (in A-loop)
GTGCGGCTAGTCTCTTTTACACATATGGATGAAGTGAGGGACTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCACGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAGAA
TATTTCATTGTTCCTATATGGGTATAAAACCGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAGGGCTGCGGTTTCAATTAAATTATAGGGAAAGAAAAAGCAACGAGCTTTTGT
TCTTAATTTGAATGATTCCCGATCTAATTAGACGTTAAAAATTTATTAGTGCCTGATGCGGGAAGGGTTT
CTTGTCCCATGAGTGGATTCTCGATTTTTTTAATGAATCCTAACTATTACCATTTTCTATTATGGAGATG
TGTGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTTGAAA
AAATAAAGGATTTCTAACCATCTTATTATCCTATAACACTATAACATAGACCAATTAAACGAAACGAAAA
AAAAAAGAGATGATAGAGAATCCGGTGAAAAGTTTACCTGTATCCAAGGTATCTATTCTTACTATAATAC
TTTGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCATCTTTGGTTCAAATCG
AATTTCAAATGGAGGAAATCCAAAGATATTTACAGCCAGATAGATCGCAACAACACAACTTCCTATATCC
ACTTATCTTTCAGGAGTATATTTATGCACTTGCTCATGATCATGGTTTAAATAGAAATAGGTCGATTTTG
TTGGAAAATCCAGGTTATAACAATAAATTAAGTTTCCTAATTGTGAAACGTTTAATTACTCGAATGTATC
AACAGAATCATTTTCTTATTTCTACTAATGATTCTAACAAAAATGAATTTTTGGGGTGCAACAAGAGTTT
GTATTCTCAAATGATATCAGAGGGATTTGCGTTTATTGTGGAAATTCCGTTTTCTCTACGATTAATATCT
TCTTTATCTTCTTTCGAAGGCAAAAAGATTTTTAAATCTCATAATTTACGATCAATTCATTCAACATTTC
CTTTTTTAGAGGACAATTTTTCACATCTAAATTATGTATTAGATATACTAATACCCTACCCCGTTCATCT
GGAAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATTCTTT
CTCCATGAATATTGGAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAAAAAA
AGCAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGTGAATCCACTTTCGTCTTTCTACG
GAACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGGAAAA
ATAGAACGTCTTATAGAAGTCTTTGCTAAGGATTTTCAGGTTACCCTATGTTTATTCAAGGATCCTTTCA
TGCATTATGTTAGGTATCAAGGAAAATCAATTCTGGCTTCAAAAGGGACGTTTCTTTTGATGAATAAATG
GAAATTTTACCTTGTCAATTTTTGGCAATGTCATTTTTCTCTGTGCTTTCACACAGGAAGGATCCATATA
AACCAATTATCCAATCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATTCTTCAATGG
TACGTAGTCAAATGTTAGAAAATTCGTTTCTAATCAATAATGCAATTAAGAAGTTCGATACCCTTGTTCC
AATTATTCCTTTGATTGGATCATTAGCTAAAGCAAACTTTTGTACCGTATTAGGGCATCCCATTAGTAAA
CCGGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAAAAATCTTTTTC
ATTATTATAGCGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGC
TAGAACTTTAGCTCGGAAACACAAAAGTACTGTACGCGCTTTTTTGAAAAGATCGGGCTCGGAATTATTG
GAAGAGTTCTTAACGTCGGAAGAACAAGTTCTTTCTTTGACCTTCCCACGAGCTTCTTCTAATTTGTGGG
GAGTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTATCAATGATT
CATTCTTAGATTTTCTAAATGGAAATTTTTTTCTAAATGATGAAGAGATAAAAAAATTTAACTATTCTGA
AATGTTGATTGTAATAGTAATTAAGGGGTAAATCAACTGAGTATTCAACTTTTTAAAGTCTTTCTAATTT
CTATAAGAAAGGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGG
AGGGGTCTTTACTTGTTTATTTTTATTTAATTTAAGATTAACATTTTTTTTTTAACAAGTAACTTATCTA
CTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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