The detailed information of tRNA gene sequence


Sequence ID>CHL090800014
Genome IDAC093544
Search identical group
Phylum/ClassViridiplantae
SpeciesMedicago truncatula
Start position on genome 119630
End posion on genome 122178
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttttttta
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCtttt
Downstream region at tRNA end position 
aaattattaa
Secondary structure (Cloverleaf model)
>CHL090800014	Lys	TTT
                   a      tttt aaattattaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2477 (in A-loop)
GTGCGACTCCATTTTTTACACATTTCTATGAACTAATTGGTTCATCCATACCATCGGTAGGGTTTGTAAG
ACCACGACTGATCCAGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGTGAATTCTAAAAATT
TTTATTGGACCCGGCCCAAATTTTCGTTTGAATTGTTGGCTCGGAACAAATGAATTCAGTTGGGTTTAAT
TAATAAAAGGATAGAGCTTAGATGCTCCAATTATAGGGAAACAAAAAGCAACGAGCTTTCATTTTTTATT
TGAATGATTACCACATCTAATTATACGTTAAAAAAGGATTAGTGCTTGCTGTGGAAAAAGTTTTTCCAAC
GAATGGATTAAGGATTTTTGTTATGAGTCCTAATTATTAGCTATTCTCCATTATGTTATGGGGTAGCAAT
AAATGTGTAGAAGAAAGAGTATATTGATAAAGATATTTTTTTCCAAAATCAAAAGAGCGATTGGTCCAAA
AAATAAAGGATTTCTAACTAGCTTGTTGTCCTAGAACAATTAGATGGAACAAGCGAGCGGAGATAGTCCA
TTAATGGGTTTTAACTTGTTTTCTAGGTATCTATTCATATATATATTTTTTTTTTCAATTCTAATATATA
TATAGAATACCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAATCCAATGAATCTCTGATCCTTT
GACCAAATAGAATTTCTAAAATGAAGGAATATCAAGTATATTTAGAACGAGCTAGATCTCGCCAACAGGA
CTTCCTATACCCACTTATTTTTCGGGAGTATATTTATGGACTTGCTTATAGTCATAATTTTAATAGATCC
GTTTTTCTGGAAAATGTAGGTTCTGACAGTAAATATAGTTTACTAATTGTAAAACGTTTAATTACTCGAA
TGTATCAACAGAATCATTTAATCATTTCGGCTAATGATTCTAACAAAAATCCATTTTGGGGCTATAATAA
TAATTTTTATTCTCAAATAATATCAGAGGGTTTTGCCATCGTGGTGGAAATTCCATTTTTCCTAGAATTA
AGCTCTTCCTTAGAGGAGGCAGAAATCATAAAATCTTATAAAAATTTGAGATCAATTCATTCCATTTTTC
CCTTTTTGGAGGATAAATTTACATATTTCAATTATGTGTCAGATATACGAATACCATATCCTATCCATCT
GGAAATTTTAGTTCAAATCCTTCGATACTGGGTGAAAGATGCCCCTTTTTTTCATTTATTACGATTGTTT
CTTTATAATTTTAGTAATTGGAATAGTTTTATTACTACCAAAAACTCGATTTCTACTTTTTCAAAAAGTA
ATCCGAGATTATTCTTGTTCCTCTATAATTTTTATGTATGTGAATATGAATCTATCTTCCTTTTTCTACG
TAATAAATCCTCTCATTTACGATTAAAATCTTTTAACGTTTTTTTTGAACGAATTTTTTGTTATGCAAAA
AGAGAACATCTTGTAGAAGTTTTTGCTAAGGATTTTTCGTATACTTTAACATTCTTCAAGGATCCTCTCA
TTCATTATGTTAGATATCAAGGAAAATACATTCTGGCTTCAAAGAATTCGCCTTTTTTGATGAATAAATG
GAAACATTATTTTATTCATTTATGGCAAGGTTTTTTTTATGTTTGGTCTCAACCAAGAACGATGAATATA
AACCAATTATCCGAACATTCATTTCAGCTTTTAGGCTATTTTTTAAATGTGCGGGTAAATCGTTCAGTGG
TACGGAGTCAAATGCTGCAAAATACATTTTTAATCGAAATTTTTAACAAAAAACTCGATATAATAGTTCC
AATTATTCCTCTGATTAGATCGTTGGCTAAAGCGAAATTTTGTAATGTATTAGGGCATCCTATTAGTAAG
CCGGTCTGGGCCGATTCATCCGATTTTGATATTATTGACCGATTTTTGCGAATATGCAGAAATCTTTCTC
ATTATTACAATGGATCCTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGCTTTCTTGTAT
TAAAACTTTGGCTTGTAAACACAAAAGTACTGTACGCGCTTTTTTGAAAAGATCAGGTTCAGAAGAATTA
TTGGAAGAATTCTTTACAGAGGAAGAAGAGATTCTTTCTTTGATTTTTCCAAGAGATTCTTCTACTTTGC
ACAGGTTAAATAGAAATCGGATTTGGTATTTGGATATTCTTTTCAGCAACGATCTGGTCAATGATGAATG
ATTGGTTATGTTATGATACTTAAATATTCTCGATATCGAATTTCTATTTTATATATATAAAAGATTATGA
AATGTTCATGTAGTTAAGAGTTGAGTTTCAAGATTCCTCTTCTGGAGAAGTAACTCAGGTTTAGATGTAT
ACATAGGGAAAGCCGTGTGCAATGAAAAATGCATGCACGGCTTGGGGAGGGATTTTTTATTCTTTTATTT
GATTAAAGAATGCAATTTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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