The detailed information of tRNA gene sequence


Sequence ID>CHL090800019
Genome IDAJ271079
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera elata subsp. hookeri
Start position on genome 4119
End posion on genome 1577
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tttttggggg
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtta
Downstream region at tRNA end position 
tatatatcat
Secondary structure (Cloverleaf model)
>CHL090800019	Lys	TTT
                   g      Atta tatatatcat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2471 (in A-loop)
GTGCGTCTAGCATCTTTTACACATTTGTATGAAGGAATGGATTCATTCATATCTTCGGTAGGGTTTGTAA
GACCACGACTGATCCTGAACTGCAAGGAATGCATGGAAAAAGCAGCATGTCGTATCAATTGAAAATTCGG
AGAATATTTCATTCTTAGTAAGCAAAAAATGAAATAAATTCAGAGTTGGGTCGAGTGAATAAATGGATAG
AGTCCTAGGAACCCGATTCATTATAGGGAAAGAAAAAGCAACGAGCTTCTGTTCTTAATTTGAACGGTTC
TCCGATCTAATTACACGTTAAAAATCTATTAGTGCCAGGATGGGGAAAGGTTTTTCCATGATTATTCATT
TTTTTTTTTATGAGTCCTAACTATTAGCTATTGCCCGCTTTGGGTTAGACATAAATGTGTAAAAGAAGCA
GCATATTGATAAAGATAGTTTTTCCAAAATCAAAAGAGCGATTGGGGTGAAAAATAAAGGATTCCTAACC
CATCTTAGTCTCTTATAACGAATCTAAACTAATTAGATTGAAAAAGAAAGAGAGGATAGAGAGTCCGTTG
ATGAGTCTATTTGTTTCCGAGGTATTTATTATTGTATTACTAGAATACCTTGCTTTGACCGTATCGCACT
ATGTATCATTTCATAACCAACAAATTCCTAACTTGGATTCAAATCGAATTTCAAATGGAGGAATTCCCGG
GATATTTCGAACTAGATAGATCTCGACAACACGACTTCCTATACCCCCTAATTTTTCGGGAGTCTATTTA
TGCACTTGCTCATGATCATGGTTTAAATAGAAATAGATCTACTTTGTTCGAAAATGAAGTTGATTATGAC
AAAAAATATAGTTTAATAATTGTGAAACGTTTAATTACTCGAATGTATCAACGGAATCATTTGATTATTT
CGGCTAATGGTTCTGTTCAAAATCCATTTTGGGGCCACAATCAGAATTTGTATTCGAAAATTCTATCAGA
AGGGTTTGCAGTCATTGTGGAAATTCCATTTTCGCTACGAGTTTTATCTTCCTTTGAAAGGAAAGAGAAA
GATATAGCAAAATCTCCTACTTTACGATCAATTCATTCAATATTTCCTTTTTTAGAGGACCAATTTTCAC
ATTTAGATTATTTGTCACATGTACTAATACCCTATCCCATCCATTTGGAAATCGCGGTTCAAACCCTTCG
CTACTGGGTGAAGGATGCCTCTTCTTTGCATTTATTACGTATCTTTCTACACGAGTATTGGAATAGTTTT
AGTACTCCAAAAAAGCATATTACCCTTTTTTTAAAAGGGAATTCAAGATTCTTCTTGTTCCTCTATAATT
CTTATGTATGTGAATACGAATCTATCTTCCTTTTTATCCGCAATCAATCTTCGCATTTCCAGTCAACATC
TTCTGGAGTCTTTTTTGAGCGAATCCTTTTCTATGTAAAAATAGACCATCTTGTTGAAGTTTTTGTTGGG
ACTGATTTTCTGGACATCCGATCCTTCTTCAAGGATCCGAATATGCATTATGTTAGATATCAAGGAAAAT
CTATTCTAGCTTCAAAGGATACACCTCTTTTGATGAATAAATGGAAATATTACCTTGTCAATTTATGGCA
ATATCATTTTTCGGTCTGGTCTCAACCCGGAAGGATCAACATAAACCAATTAGGTAAGTATTCTCTTGAC
TTTTTGGGATATTTTTCAAACGTGCAACTAAAGTCTTCAGTGGTACGAAATCAAACGCTAGAGAATTCAT
TTCTAATAAATAATGCTATGAAGAAGCTCGAAACAACAGTTCCAATTTTGCCTCTGATTGGATCGTTGTC
TCGAGCGAAATTTTGTAATGCATTAGGACATCCCATTAGTAAGCCGACCCGGAATGATTCATCCGATTCT
GATATTATCGACCGATTTGTGCGTATATGCAGAAATCTTTCTCATTATCACAGTGGGTCTTCAAAAAAAA
AGAGTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGTTAAAACTTTGGCCCGTAAACATAAAAG
TAGTGTACGCGCTTTTTTGAAAAGATTAGGTTCGGAATTAGGGGACGAATTCCTTACAGAGGAAGGAGTT
GTTCTTGCTGTGATCTTCCCAAAAGCGTCGGGAAGGTTATATAGAGGCCGAATTTGGTATTTGGATATTC
CTTGTATCAATGATCGGGTAGGCGACGCGGAAGGATCCATTTTTACTAAATGATGACGTAAAGAGATATA
CTAAACAAATTCATTCATTTTTTTTTATGAAATGCTCATGCAAGAAGAGTAAGAGTAGAGTAAGGGTTGA
TTAAATGAGTATTTCATTTTTCGTAGAGTAATGTCTAGCGACGAAATTGACTTTTAGCTCGATACATAGG
GAAAGCCGTGTGCAATGAAAAAAAGCAAGCACGGTTTGGGGAGGGATTTTTTGACCTATTTTTCTTTGAA
CAAAGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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