The detailed information of tRNA gene sequence


Sequence ID>CHL090800023
Genome IDAJ400848
Search identical group
Phylum/ClassViridiplantae
SpeciesSpinacia oleracea
Start position on genome 4055
End posion on genome 1489
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tctatttttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGATGGGTCCGGGTTCAAGTCC
CGGGCAACCCAttt
Downstream region at tRNA end position 
tttaatactg
Secondary structure (Cloverleaf model)
>CHL090800023	Lys	TTT
                   c      Attt tttaatactg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     A
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     GGGT
                    C   T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2496 (in A-loop)
GTGCGGCTAGAATCTTTTACATATTTGGATGAAGCAAAGAATTCGTCTACATTATCGGTAGAGTTTATAA
GACCACGACTGATCCTGAAAGGAAATGAATGGAAAAAAGAGCATGTCGTATCAATATAAAATTAGGACAA
TATTTCATTCTTACCAAATTGGTACAAAATTCTATTTGAATTCTTGTAAGGGAACGAAATGAATTTAAAG
TTGGGTCGATTGAATAAATGGATCGAACCTTAATGGTTCAAATTCTGGGGAAAAAAAGAACAACGAGTTT
ATCTTCATAATTTGAATGATTTCCCGATCTAATTAGACGTTAAAATAAATTAGTGACTGATGCGGGAAAG
GATTCTCCCACGAGTGGATACTTTGTTTTTTATAGTGAATCCTAACTATTCTATTATCCAGTTAAGGGGA
TAGCGATGAATGTGTAGAAGAAAGAGTATATTGATAAAATACTTTATTCCAAAATCAAAAGAGCGATTGG
GTTTAAAAAATAAAAGATTTCTAACCATCTTATTTTTTTATCTTATAAGATAAAAAACCAATTAGATGGA
ACAAAAATAGAGAGTCTGCTGATGAATTTACCCGTTATCCGAGGTATCTATTATTTCCTAATAAAATACC
CTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCAAGAAACCCTCTATTTTTACTTTTGTTTTC
GGTCTAAATTAAATTGAAATGGAAGAATTCCAAAGACATATAGAACTAGACAGGTCTTGGCAACATAATT
TTTTATATCCACTTATCTTTCAGGAATATATTTATGCATTTGCATATGATCATGGTTTAAATAAATCGAT
TTTGTTGGAAAATTCAGGCAACAGTAAATACAGTTTACTGCTTGTAAAACGTTTAATTACTCGAATGTAT
CAACAGAATCATTTGATTCTTTCTGCTAATGATTCGAATCAAAATGTAATTTTGGGGCACAAGCACAAAA
AGAATTTGTATTCACAAATGATAACAGAAGGGTTTGCCGTCATTGTGGAAGTTCCATTTTCCCTACTATT
AATATCTTCCCTAGGGGAAAAAGAAATAGTAAAATCTCATAATTTGCGATCAATTCATTCAATATTTCCC
TTTTTAGAGGACAAATTATTACATTTAAATTATGTGTTAGATATATTAATAACTTACCCCGCCCATCTCG
AAATCTTGGTTCAAACTCTTCGCTACTGGGTGAAAGATGCCTCTTCTTTGCATTTATTACGATTTTTTCT
TTATGAGTATCGTAATTTGAATAGTCTTATTACTCCAAAGGAATTGATTTCCTTTTTGAAAAAAAGGAAT
CAAAGATTATTCTTATTCCTATATAATTTGCATGTATGTGAATACGAATCCCTTTTTGTTTTTCTCTGCA
ACCAATCCTCTTATTTACGACCAACATCTTTTGGAGCCCTTATTGAACGAATCTATTTCTGCGGAAAGCT
AAAATATCTAGTAAAAGTTTTTACTAAGGATTTTGGAGTTATCCTATGGATTTTCAGAGAACCTTTCCCA
CATTATGTTAGGTATCAAGGAAAATCAATTCTGGCTTCAAAAGGGACATCTCTTCTGATGCATAAATGGA
AATATTACCTTATCTATTTCGGGCAATGTCATTTTTCTGTGTGGTCTCAACCAAAAAGACTCTATATCAA
TCGATTATCAAACCATTCCCTAGACTTTATGGGTTTTCTTTCAAGGGTGCGACTCAATTCTTCAGTAATA
CGGAGTCAAATGTTAAAAAATTCATTTCTAATAGAGAATATTAGTAAGAAGTTCGATACCGTAGTTCCAA
TTATTCCTTTGGTTGGGTCATTGGCTAAAGCGAAATTTTGTAATGTATTAGGGCATCCCATTAGTAAGTC
GGTCTGGACCGATTTATCAGATTCTGATATTCTTGATCGATTTGGACGTATATGTAGAAATATTTCTCAT
TATTATAGCGGCTCTTCAAGAAAAAAAAGTTTGTATCGAATAAAGTATATACTTCGACTTTCTTGTGCTA
GAACTTTGTCTCGTAAACACAAAAGTACTGTACGTGCTTTTTTGAAAAGATTAGGTTCAGAATTTTTAGA
AGAATTCTTTACAGAGGAAGAAAAAGCTCTTTCTTTGATCTTACCAAGAGATTCTTCTATCTCACGGGGA
TTATATAGAGGGCGTATTTGGTATTTGGATATTATTTGTATTCATAATTTGGCCAATGATGAATGATTTA
TTATGAGAGTGTCTAAATGAAATGGGAATTATCCCGAAATGAATGGAGGGATAAGATAAAAAAAATTCAT
TCATTTTTATACTGAAATGCTTATGCAATTAAGGGTTGAATATTCAACTTTGTTCGAGTTCCCCCTAGAA
AGGGAACTGAGTGTAAAATTTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGG
AGAGGTTTTTTCTTTTTTTTTTTAACAGGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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