The detailed information of tRNA gene sequence


Sequence ID>CHL090800026
Genome IDAJ428413
Search identical group
Phylum/ClassViridiplantae
SpeciesCalycanthus floridus var. glaucus
Start position on genome 4207
End posion on genome 1664
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tatattctac
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAttc
Downstream region at tRNA end position 
tgttaccata
Secondary structure (Cloverleaf model)
>CHL090800026	Lys	TTT
                   c      Attc tgttaccata
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2472 (in A-loop)
GTGCGGCTACAATCTTTTACACATTTGATGAAGCAACGGATTCGTCCATACCATTGGTAGAGTTTGTAAG
ACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAACAGCATGTCGTATGAATGGAGAACTCTGAGAAT
ACTTCATCCCGATCGATACAAAATCTTGTTTTGATTCTTGGGACGGGGTCAAATCAATTCACAGTCGGGT
CGAGTGAATAAATGGATAGAGCCCTATGGCTCCAATTATAGGGAAACCAAAAGTAACGAACTTCTGTTCT
TAATTCGAATGATTACCCGATCTAATTAGACGTTAAAAATATATTAGTGCCTGACGCGGGAAAGGGTTCT
CCTGTGAGTGGATCATCGATTCCTTTTTTTTTATGAATCCTAACTATTCTCCATTATGGAGTGGAGATAA
ATGTGTAGAAGAAGGGGTATACTGATAAATAAAATGAATTATTCCAGAGTCAAAAGAGTGATCGGGTTGC
AAAAATAAAGGATTTCTAACCATCTCTTGTAACTATAACGAACACAAACAAATTGGATGGAAAAAGAGAG
ATCCGTTGATTGTCCTCCATGTCCCCGGGGTATCTATTATTTTATATATACCTTGTTCTGACCGTATCGC
ACTATGTATCATTTGATAACCCAAGAAATCCCCCATGCTTTTGTTTGATTCAAGTATAATTTCAAATGGA
GGAATTACAAGGATATTTAGAAATAGATGGATTTCGGCAACACCACTTCCTATATCCGCTTCTACTTCAG
GAATATATCTACGCACTTGCTCATGATCATGGTTTAAATGGATCGATTCTTTCCGAACACATGGAGAATT
TGAGTCATGACAATAAATCCAGTTCACTAATTGTGAAACGCTTAATTACTCGAATGCATCAACAGAATCA
TTTTATTATTTCGGTTAATGATTCTAACCAAAAAGGATTCGTTGGGCACAACAAGAATTTTCATTCTCAA
AAGATATCGGAAGGTTTTGCCGTCATTGTGGAAATTCCATTTTCACTGCAATTAGTATCTTCTCTAGAAG
AAAAAGAAATAGCAAAATTTCATAATTCACGATCTATTCATTCAATATTTCCCTTTTTCGAGGACAAATT
ATCACATTTAAATCATGTGTCAGATATACTAATACCCTACCCCATCCATCTGGAAATCTTGGTTCAAACC
CTTCGCTGCTGGATACAGGATGCCCCCTCTTTGCATTTATTGCGATTCTTTCTCCATGAGTATTGGAATT
CAAATAGTCTCATTACTCCAAAGAAATCCATTTCCTTTTTTTCAAAAGAGAATCAAAGATTATTCTTGTT
CCTATATAATTCGCATGTATATGAATGCGAATCCGTATTCATTTTTCTCCGTAAACAATCTTCCCATTTA
CGATCTACATCTTTTGGATCTTTTCTTGAGCGAACACATTTCTATGGAAAAATAGAGCATCTTGTAGTAG
TGCTTGGGAATGATTTTCCGAAGACCTTATGGTTGTTCAAAGATCCTTTCGTGCATTATGTCAGATATCA
AGGAAAATCCATTCTAGCTTCAAGGGGGACTCAGTTTCTGATAAAGAAATGGAAATATCACCTTGTCAAC
TTCTGGCAATGTCATTTTTACTTGTGGTCTCAACCAGACAGGATTCATCTAAACCAACTATGCAATCATT
CCTTCTATTTTCTGGGTTATCTTTCAAGTGTGCAACTAAACTCTTCGGTGGTAAGGAGTCAAATGCTAGA
AAATGCATTTCTAATGGATACTGCTATTAAGAAATTCGAGACCATAGTCCCAATTATTCCTCTGATTGGA
TCATTGGCTAAAGCAAAATTTTGTAATGGATCAGGGCATCCCATTAGTAAGCCGTTTCGGACCGATTTGT
CGGATTCTGAGATTATCAATCGATTTGGTCGGATATGCAAAAATCTTTCTCATTATCACAGCGGATCCTC
AAAAAAACAGAGTTTGTATCGAATAAAGTTTATACTTCGACTTTCGTGTGCTAGAACTTTGTCTCGTAAA
CATAAAAGTACGGTACGCGCTTTTTTGAAAAGATTAGGTTCGGAATTATTGGAAGAATTCCTTACGGAGG
AAGAACAAGTTCTTTCTTTGCTATTCCCAAGAACCCCCTCTCATAGGCCGCACAGAGAACGGATTTGGTA
TTTGGATATTATCTGTATCAATGATCTAGCCAATCATGAATGATTGGTCATGAGGTCATGTAAATAGAAA
CGATCCCTAAATGAATGATGAAGAGATACAATCCAAAAAATTTGTATTCATTTTTATTCTGAAATGCTCA
TGCAATAGTGTAGTAGTTGAATCAACTGAGTATTCAAGTTTGGTTCGAACTGAGTTTTCGATGTATACAT
AGGTAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATCTTTTTTCCTATTCTATTGCA
ACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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