The detailed information of tRNA gene sequence


Sequence ID>CHL090800028
Genome IDAJ506156
Search identical group
Phylum/ClassViridiplantae
SpeciesAmborella trichopoda
Start position on genome 4519
End posion on genome 1849
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atttttttcT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATtc
Downstream region at tRNA end position 
ttcccatatg
Secondary structure (Cloverleaf model)
>CHL090800028	Lys	TTT
                   T      ATtc ttcccatatg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2597 (in A-loop)
GTGCGACTATGATCTTTTACACATTTGGATGAAGCAACGGATTCATCCATACCATTGGTAGGGTTTGTAA
GACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAAGAGCATGTCGCATCCATGGATAACTCTACAAA
TCTTCATTCTTATTTGTTCATACCGGATCTGTACAAAATCTTGTTTTCATTCTTGGAACGAAACCAAATC
AATTTACAGTTGGGTCGAGTGAAGAAATGGATAGAGCTATATGGCTCCAATTAAAAATTAATTATATTCT
TATCTTAATAGTTATAGGGAAACAAAAAGCAACGAACTTCCGTTCTTAATTCGAACGAGTACCCGATCTA
ATTAGACGTTAAAAAGGGATTAGTACCTGGTGCGGGAAAGAGTTCTCCTGTGAGTGGATCGTCAATTCTT
TTTTTTTTCAAAAACGAATCCTAACTATTCACTATTTTCCATAAGCTGCTGGAGTAGAGACAAATGTGTA
TAAGAAACAGTGTACTGATAAAGAATATTCATTCCAAAATCAGAAGAGCGATTAGGTTGCCAAAATAAAG
GATTGCTAATACACCATCTCTTGTAACTATAGCATAAGGAGCACAAAAAAAATTGGATGGAAAAAGAAAG
CACCCGTCGATTAGACTACCCGGGGTCTCTATTGGTATTCCCATATATTATAGATCTTGCTTGTTCCGAC
CCTATCGCACTATGTATCATTTGATAATCTAAAAAATATCTTCTGCTTGCGGTACCAATTGGATTTTCAA
TGGAGGAATTACGAGGATATTTAGAAATAGATAGACCCCATCAACAACGCTTCCTATATCCGCTTCTATT
CCAGGAGTCTATCTATGCACTTGCTCATAATCATGGTTTAAATGGATCAATTCTTTACGAACCCATGGAA
GATTTAGGTCATGACAAGAAATCCAGTTCACTAAATGTAAAACGTTTAATTATTCAAATGTATCAACAGA
ATCATTTCATCATTTCATTTAATGATTCTAACCAAAATAGATTTCTTGGGCATAGCAGGAATTCTTATTT
TCAAATGGTATCAGAGGGTTTTGCAGTAATTGTGGAAATTCCATTCTCGATGCGATTAGTATCTTCCCTA
GAAAAAGGATCTGAATCTCATAATTTCCAATCTATCCATTCAATATTTCCGTTTCTAGAGGACAAACTTT
CATATTTAAATTATGTGTTAGATATACTAATACCCCACCCAATCCATCTGGAAATCTTGGTTCAAAGCCT
TCGCCAATGGATACGAGACCTTCCTTCTTTGCATTTATTGCGGTTTTTTCTCCACGAACATCAGAATTGG
AATAGTTTCATTACTACAAATACAAAGAAATGCAGTTCTTTTTTTTCAAGAGAGAATCAAAGATTGTTTT
TGTTCCTGTACAATTTTCATGTATATCAATTTGAATCCCTTTTCGTTTTCCTACGTAAACAATTTTTTCA
TTTACGGTCGATATCTTTTGGATCTTTTCTTGAACGAACACATTTCTATGGAAAAATAGAAAATTTTGTA
GTATCCATGCGTAATCATTCTCAGAATATTTTATGGTTGTTCAAGGACCTTTTCATGCATTATGTTAGAT
ATAAAGGAAAATCAATTATGGCTTCAAGGGGTACTTATCTCCTTATGAATAAATGGAAATCTCACCTTGT
CAATTTCTGGCAATTCCGTTTTTACTTCTGGTCTCAACCGGGCAGAATCCATATAAATGAATTATCCAAT
CATTCCTTCTATTTCCCGGGCTATCTTTCAGGTCTACGATTAAATCCCTCGATGGTAAGGAGTGAAATGC
TAGAGAATTCATTTATGATAGATGCTGTTATCAAGAGATTCGATACAGTAGTCCCAACTATTTTTCTTAT
TGGATCCTTGGCTAAAGTAAAATTATGTAACGTATCAGGGCATCCTATTAGTAAGTCGGTCTGGGCCGAT
TCGTCAGATTCTGATATTCTCGATCAATTTGGGCGGATATGCAGAAATCTCTCTCATTATCACAGTGGGT
CCTACAAAAAACACAGTTTGTGTCGAATAAAATATATACTTCGACTTTCGTGTGCTAGAACTTTGGCTCG
TAAACATAAAAGCACGGTACGCGCAATTTTGAAAAGATTAGGTTCGGAATTCTTGGACGAATTCCTTACG
GAGGAACAAGAGATTCTTTCCTTGATTTTTCCAAAAACCCCTTTCCATAGTGGACGAATTTGGTATTTGG
ATATTATCCGTATTCATAGTCTGGCCAATCATTGATGATTGATCGTGGGACCATGTAAAATGTCAATAAT
AAAGTATTCATAACTGGTCATTGTATGTATTTATATATTCTTATCTATATATTATATAGATAAGAATATA
TAGATAAACAAGTCTAATTCATTGAAATATTGAAATGCTCTGCTCATGGAATGGAGTAGTAGTTGAATCA
ACTTAGGATTCAAGTTTCTTATATTTTTTTCTAGGGAACCGAGTTTTAAATGTATACATAGGGAAAGCCG
TGTGCAATGAAAAATGCAAGCACGGTTTAGGGAGAGATCCTTTTCTCTTATTCAAAGAGTGAGATTATCT
ACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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