The detailed information of tRNA gene sequence


Sequence ID>CHL090800036
Genome IDAM087200
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum lycopersicum
Start position on genome 4401
End posion on genome 1815
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800036	Lys	TTT
                   c      ACta tcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2514 (in A-loop)
GTGCGGCTAGTGTCTTTTACACATATGGATGAGGTGAGGGATTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCGCGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAAAA
TATTTAATTGTTCCTAGATGGGTATAAAACTGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAAGGCTGCGGCTTCAATTAAATTATAGGGAAAGAAAAAGCAACGAGCTTTTGT
TCTTAATTTGAATGATTCCCGATCTAATTAGACGTTAAAAATTTATTAGTGCCTGGTGCGGGAAGGGTTT
CTTGTCCCATGAGTGTGTTCTCAATTTTTTTAATGAATCCTAACTATTACCATTTTCGATTATGGAGATG
TGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTTGAAAAA
ATAAAGGATTTCTAAACATCTTATTATCCTATAACACTATAACATAGACCAATTAAATGAAACGAAAAAA
AAAAAAGAGATGATAGAGAATCCGTTGAGAAGTTTACCTGTATTCAAGGTATCTATTCTTACTACAATAC
TTTGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCATCTTTTGTTCAAATCG
AATTTCAAATGGAAGAAATCCACAGATATTTACAGCCGGATAGCTCGCAACAACACAACTTCCTATATCC
ACTTATCTTTCAGGAGTATATTTATGCACTTGCTCAGGATCATGGTTTAAATAGAAATAGGTCGATTTTG
TTGGAAAATTCAGGTTATAACAATAAATTTAGTTTCCTAATTGTGAAACGGTTAATTACTCGAATGGATC
AACAGAATCATTTGATTATTTCTACTAATGATTCTAACAAAAATCCGTTTTTGGGGTGCAACAAGAGTTT
GTATTCTCAAATGATATCAGAGGGATTTGCATGTATTGTAGAAATTCCGTTTTCTATACGATTAATATCT
TCTTTATCTTCTTTCGAAGGCAAAAAGATTTTCAAATCTCATAATTTACGATCAATTCATTCAACATTTC
CTTTTTTAGAGGACAATTTTTCACATCTAAATTATGTATTAGATATACTAATACCCTACCCCGTTCATCT
GGAAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATTCTTT
CTCCACGAATATTGTAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAAAAAA
ATCAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGCGAATCCACTTTCGTCTTTCTACG
GAACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGGAAAA
ATAGAACGTCTTGTAGAAGCCTTTGCTAAGGATTTTCAGGTTACCCTATGGTTATTCAAGGATCCTGTCA
TGCATTATGTTAGGTATGAAGGAAAATCAATTCTGGCTTCAAAAGGGACGTTTCCTTGGATGAATAAATG
GAAATTTTACCTTGTCAATTTTTGGCAATGTCATTTTTCTATGTACTTTAACACAGGAAGGATCCATATA
AACCAATTATCCAACCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATCATTCAATGG
TACGTAGTCAAATGTTAGAAAATTCATTTCTAATCAATAATCCAATTAAGAAGTTCGATACCCTTGTTCC
AATTATTCCTTTGATTGGATCATTAGCTAAAGCACACTTTTGTACCGGATTAGGGCATCCCATTAGTAAA
CCAGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAGAAATCTTTTTC
ATTATTATAGTGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGC
TAGAACTTTAGCTCGGAAACACAAAAGTACTGTACGCACTTTTTTGAAAAGATCGGGCTCGGAATTATTG
GAAGAATTCTTAACGTCGGAAGAAGAAGTTCTTTCGTTGACCTTCCCACGAGCTTCGTCTAGTTTGTGGG
GAGTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTCTCAATGATT
CATTCTTAGATTGTCTAAATGACGAATAAATGACGAAGAGATCAAAAATTTTAACTATTCTGAAATGTTG
ATTGTAATACTAATAAGGGGTAAATCAACTGAGTATTCAACTTTTTTAAGTCTTTCTAATTTCTATACGA
AAGGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAGTGCAAGCACGGCTTGGGGAGGGATCT
TTACTTGTTTATTTAATTTAAGATTAACATTTATTTTATTTAACAAGGAACTTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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