The detailed information of tRNA gene sequence


Sequence ID>CHL090800044
Genome IDAP002983
Search identical group
Phylum/ClassViridiplantae
SpeciesLotus japonicus
Start position on genome 4478
End posion on genome 1780
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
cttagttaga
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCAAGTC
CCGGGCAACCCAttc
Downstream region at tRNA end position 
taatacattg
Secondary structure (Cloverleaf model)
>CHL090800044	Lys	TTT
                   a      Attc taatacattg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     A
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2627 (in A-loop)
GCGCGACTCCATTTTTTACACATTTTATGAAGAATTTGGTTCATCCATACCATCAGTAGAGTTTGTAAGA
CCACGACTGATCCAGAAAGGAATAAATGGAAAAAGCAGCATGTCGTATAAATGTTGAATTCTAAAAATGT
TTTATTCTTATTGGATCCGGTCCAAATTTTTGTTTGAATTCTTGGTTCGGAACAAAAAAATTCAGTTAGG
TTGGATTAATAAAGGGATAGAGCTTGGTGGCTCCAATGATAGGTAAACAAAAAGCAACGAGCTTTCATTT
AAAATTGGAATGATTACCCCATCTAATTGTACGTTAAAAAGAAATTAGAGCTTTCTGGGGAAAAGCTTTT
CCCGTGAATGGATTATGGATTTTTGTTATGAGTCCTAATTATTAGCTATTCTCCATTCTGTTATGGAGTA
GCGATAAATGTGTAGAAGAAAGAGTATATTGAGAAAGATATTTTTTTTTCCAAAATCAAAAGAGCGATTG
GGCTGAAAAAAAAAAAATAAAGGATTTCTAACTAGCTTGTTATCCTAGAACATTTAGATGGAAAAAGCGA
GTTGAGAGAGTCCATTGATAGCTTTTATTTGTTTTCTGGGTATCTATATCATATTCGTTTTTTTTATTCG
AATTCTAATTTATAATAGATAATAGAATATCCTGTTTTGACCATATCGCACTATGTATCATTTGATAATT
CAACGAATCTCTGATCCTTTTGATCAAATAGAATTTCTAAAATGGAGGAATATCAGTTATATTTGGAACT
GGATAGATCTCGTCAACAGGACTTCCTATACCCACTTGTTTTTCACGAATATATTTACGGACTCGCTTAT
AGTCATGATTTAAATAGATCAATTTTTGTAGAAAATTTTGGTTATGATAATAAATATAGTTTACTAATTG
TAAAACGTTTAATTACTCGAATGTATCAACAGAATCATTTGATTATTTCGGCTAATGATTCTAACAAAAA
TCGATTTTTGAGGTATAATAAGAATTTTTATTCTCAAATAATATCAGAGGGTTTTGCCATCATCGTGGAA
ATTCTGTTTTCTTTACAATTAAGCTCGTCCTTAGAGGAGGCAGAAATCATAAAATCTTATAAAAATCTGC
GATCAATTCATTCTATTTTTCCCTTTTTCGAGGATAAAGTTACATATTTAAATTATATATCAGATATACG
AGTCCCTTATCCTATCCATCTGGAAATCTTAGTCCAAATCCTTCGATACTGGGTGAAAGATGCCCCTTTG
TTTCATTTATTAAGACTGTTTCTTTATGATTATTGTAATTGGAATAGTATTTTTATTCCCCAAAAATCGA
TTTATACTTTTTCAAAAAAGAATCCAAGATTTTTCTTCTTCCTATATAATTTTTATGTATGTGAATATGA
ATCTATCTTTTTTTTTCTACGTACCAAATCTTTTCATTTACGATTAAAATCTTTTAGAGTTTTTTTTGAG
CGAATCTTTTTCTATGCAAAAAAAGGACATCTTGTAGAAGTATTTGTTAAGGATTTTTTTTCTACCTTAA
CATTCTTTAAGGATCCTTTCATCCATTATGTTAGATATCAGGGAAAATCCATTCTGGCTTCCAAGAATTT
GCCTATTTTAATGAATAAATGGAAATACTATTTTATCCATTTATGGCAATGTTATTTTGATGTTTGGTCT
CAACCGCGAACAATCCGTATAAACCAATTATCCGAATATTCATTTCACTTTTTGGGCTATTTTTTAAAGG
TGGGGCTGAAGCATTCAGTAGTACGGGGTCAAATGCTGCAAAATGGATTTCTAATCAAAATTATTATAAA
AAAGCTTGATATAATAGTTCCAATTATTCCAATAATTAGATTATTGGCTAAATCGAAATTTTGTAATGTA
TTAGGGAATCCCCTTAGTAAGCCGTCCTGGGCCGACTTATCCGATTTTGAGATTATTGCCCGATTTTTGC
GGATATGCAGAAATCTTTCTCATTATTACAATGGATCCTCAAAAAAAAAGAGTTTGTATCGAATAAAATA
TATACTTCGGCTTTCATGTATTAAAACTTTGGCCTGTAAACACAAAAGTACCGTACGCGCTTTTTCGAAA
AGATTAGGTTCGGAAGAATTATTGGAAGAATTCTTTACAGAGGAAGAAGAGATTCTTTCTTTGATCTTTC
CAACAACTTCTTCTACTTTACGGAGGTTACATAGAAATCGGATTTGGTATTTGGATATTCTTTTTAGCAA
CGATAACGATCTAATCAATCATGACTGATTATTTATGTTATGATACTTCGGAAATGAAGAAAGGGAAATT
ATCCTTAAATAAGTTAAATAAGGATAAACAAAAATTCATTCATTTCTACTATACTAGTATTCTATTCTAT
AAGATAATTTATAAAGATAATTTATAGGATTATGAAATGTTCATGGAATAAGAGCGGAGATTCGGCATTC
ATTAACTGAATATTTCACTTTTTAGATTTTTGTTCTCTGAAAGTCACTCAGGTTTAGATGTATGTATACA
TAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGGTTTTTTCTTGTTTTATTGTTT
AATTTCATTAAACAATACAATAAAATATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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