The detailed information of tRNA gene sequence


Sequence ID>CHL090800046
Genome IDAP004638
Search identical group
Phylum/ClassViridiplantae
SpeciesPsilotum nudum
Start position on genome 11282
End posion on genome 8799
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttatgaataT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACAAGTTCCGGGTTCGACCC
CCGGGCAACCCAAtc
Downstream region at tRNA end position 
caatcttatt
Secondary structure (Cloverleaf model)
>CHL090800046	Lys	TTT
                   T      AAtc caatcttatt
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          C C
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     AAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2410 (in A-loop)
GTGCGACTAGGGAATTTTATACATTTTAGTGAAGTTCAAATTCATCTAAACCTTTGGTTAGGTTTGTTAG
ACTACGACTGATCCTTGGCTCGAAGGAAAATGCAGCATGTCGTTCTTATCCATATGGAATCGTGAAAAGA
TATGATCTTATTAATTGACCATACATTAATAGATTACCAAAATAGGAAAGATCGGAAGAAAAGCAAAGTA
TCAAATCAATTTGATACGTTGACTTACTATTCGAAGTCAAAGGAGTTAATGGATAAAGCTAGATAGCTTG
AATCAAAGGTAAAACCAGAAGAACGAGCTTCTGTTCATTGACCTATTCTTTCGAACTCTCTTTACTAATT
AGTGGTTAAAAGCTAATTGGAAGCCAATGATAGGAGGGGTTCATTCCCATTAAAGGAACACTGTTACCTA
AAAGGAGTCCTAATTACTCAAAGAAAAAAAAAGATATATATGTGTGTAAAAAACCTGTTTGCTAACTTAT
GAAAAGAATTATTCATTTCAAAAGTTGGGAGAGCAATCGACTCTCGATCAAAATAGATTGATGGAATCTT
CTCCTTAATAAACAAGATTGAAAGGACAGTTTCTAATATGTCATATGGAATCCCTGAAGAGGTATTTCCT
ATACTATATAGGAATTCTATCAACCTATCATCGAATAGATTGCACTATGTAATATCTCAAAATTTGATAG
GGTACTCTCATGAGAACCATAAATAAAATCTTAGACAAGATTGGTAAAGTCCAAAAGGGAAAAAGTCTTT
TATGGCAACTGTACCCTTTACTATTTCGTGAGGATCTTTATGCAATAGCTTATAATCGTTCGTCTAGTGA
ATTAAGTCTGAAATCAATGAAACATCGAGATTCATCTGATAGATACAGTTTAGTCATAATAAAACGTTTG
ATCAATCGGATACGTAACCAAACGACCTCAAAGTTGCTTTTTCAAGGTTCTGATCGAAAAAATTTAAAAA
TAAATCGTTCTTTATTTGAAGGTCTAACAGTACTTTTTGAGATGATCATTCCAGTTGAATCAAGACCCTT
AGTGCAATATCAAAGTGAATGGAATAGTCTCCAATCTATTCACTCAATTTTTCTTTTTATGGAAGACAGG
TTCTTTTATTCCAATTCTATTTTGGGCTTAAAGATACCTTATTACTTTCATCCGGAAATGATTATTCGAC
TCTTTCGTCGACGTATCAAGGATGTTTTTTTATTACACTTAGTAAGATTACTATTTCACAATTATCAGAA
TCCTTTTGTTCCAGAGACATCCTTGTTTTATTCCCTTAAGGATAGTCAAAAAAGGTTGTCTATTCTTTTA
CGGAATCATTATTTCTATGAGTTTGAAAATCAATTAGTTCCTTTATGGAAGCGATTCGTCCAGTTGCAAT
CGCTTTCTCATAGATTTCTAATGGATCAAACAAATCCTCTTTACAAAATGAAACATGGTTTAGGATCTCT
TCAACCGTTTCTATCAGAGATCAATTTACTTGAAACTCCTTGTATACACTATGTAAGATATGAAAATCAT
TCTATTATAGCGTTTAAAGGAACTAAATCTATTGTGAATAAATGGATAAAATATCTAGTTGGATTCTGGC
AATACAACTATCATTATTGGTTACAACCTTGTCAAATAGATATAAGAAGACCCTCACGTCGTTGTTTCTC
TTTTATGGGTTATATCTTGGGTTTTCGATCCAGAATGATAAAGGTTCATACCAAAAGGATAGATGAATCA
TCTACTACTCATTGTATTATAAAAGAATTCTGTGCTAGTATTCCAACATCATCTTTAATAGAATCTCTAA
CAAGAGAAGGCTTTTGTGATAGTTCGGGTCGTCCTGTTGGTCGATCAACTTGGACTATTCTAAAGGATGA
TGATATTTTGAATAAATATCATCAAATATGGGGAGATTTATCTTGCTATTATAGTGGATCATTTAGTAGA
GACGGTTTATGGAGAGCCAAATATATACTTCAACTCTCATGTGCCAAGACTTTAGCTCAGAAACATAAAA
GCACAACACGTGTAGTTCGAAATCATTTTGGTTTGAAGTTCATTACAACATTAAACTCAGTTAAAAATCC
TTTTTTCATAGGTTCTCAAGAATATTCACATAGGAAGAATTTTTGGTGTCTAGATATCATCCGAATGAAT
TCACTAGTTAATTTAATCAATATGAAAAAAGAAAGTCTGAGTAGTTCTTAAGTAAGATTTACTCAGTTTC
TTTTTATTAAATTATGATAGCAATTGCTAAGATTCTTTATCAATGGAAAACTAAGAGTACTTTTTGGGAT
AAATACACAGAGAAAGCCGTGTGCTATGAAAGTAGCAAGCACGGTTTGGGAAGAGATGCTTTATTATTTT
ATCACCATAAAATAAAGTATCCACTTTCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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