The detailed information of tRNA gene sequence


Sequence ID>CHL090800055
Genome IDAP007232
Search identical group
Phylum/ClassViridiplantae
SpeciesLactuca sativa
Start position on genome 4374
End posion on genome 1765
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttttctattT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCATtg
Downstream region at tRNA end position 
tcatagtgaa
Secondary structure (Cloverleaf model)
>CHL090800055	Lys	TTT
                   T      ATtg tcatagtgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2536 (in A-loop)
GTGCGGCTAGGATCTTTTACACATTAGATGAAGCGAGGGATTCATCCATACCATCGGTAAAGTTTGGAAG
ACCACGACTGATCCTGAAAGGGAATGAATGGAAAAAATAGCATGTCGTATCAATTAAGAGTTCTGAGAAT
AATTTATTCCGGCTCGGTACAAAACCTTCTTTAAATTAGTGAAAGGGAGCAAACCGAAGTCAATTTCAAG
TTGGGTCGAATTAATAAATGGATAGGGCCCCGCGGCTTCAATTAATTTCATTTTGATTATAGGGAAAGAA
AAAGCAACGAGCTTCCGTTCTTAATTTGAATGATTACCCGATCTAATTAGACGTTAAAAAAATATTAGTG
CCCAATACGGGAAGGCTTTCTCCCAGGAAGGAATGTATTCTTGATTTTTTAATGAATCCTAAATATTACC
ATTCTCCATTCCATAATGGAGATGTGTGTGTATAAGAAACAGTATATTGATAAAAAATTTCCAAAATCAA
AAGAGCGATTGGGTTGAAAAAAAAGTAAAGGATTTCTAATCATCTTGTTATCCTATAATGAAAACGAACA
TAAATATTGAAATTGAAATGGAAAAAGAGAGGCTAGAGAATCTGTTGATAAGTTTATCTGTATCCGAGGT
ATCTATTCGGTTTGTACTATAATACCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCCCAA
AATCCTCTACCTTTCATTTAAATAGAATTTCAAATGGAGAAATTCCAAAGCTATTTAGGGCTAGATAGAT
CTCAACAACACCACTTCTTATATCCACTTATCTTTCAGGAGTATATTTATGTACTTGCTCATGATCATGG
TTTAACTAGATCGATTTTGTTGGAAAATGCAGGTTATGACAATAAATCCAGCTTACTAATTGTGAAACGT
TTAATCAATCGAATGTATCAACAGAATCATTTGATTCTTTCGGTTAATAATTCTAAACAGACTCCATTTT
TGGGGCACAACAAGAATTTTTATTCGCAAGTAATGTCCGAGGTCTCTTCAATCATTATGGAAATTCCATT
GTCTCTGCGATTAATATCTTACCTAGAAAGGAAAGGGGTAGTCAAATCCGATAATTTACGATCAATTCAT
TCAATATTTTCTTTTTTAGAGGACAACTTTTCACATTTAAATTATGTATTAGATATACTAATACCTTACC
CAGCCCATCTGGAAATCTTGGTTCAGGCTCTTCGCTATTGGATAAAAGATGCTTCCTCTTTGCATTTATT
AAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTGATTACTTCAAATTCAAAGAAAGCCAGTTCT
TCTTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATTTATGTGAATATGAATCCG
GCTTCCTCTTTCTCCGTAACCAATCTTCTCACTTACGATCAACATCTTCTGGAGCCCTTATTGAACGAAT
ATATTTCTATGGAAAAATAGATCATCTTGCAGAAGTCTTTGCCAGGGCTTTTCAAGCGAATTTATGGTTG
TTCAAAGATCCTTTCATGCATTATGTTAGGTATCAAGGAAAATCCATTCTTGGTTCAAAAGGGACGTTTC
TTTTGATGAATAAATGGAAATATTACTTTGTCAATTTCTGGAAATCTTATTTTTACCTGTGGTCTCAACC
AGGAAGGATTTATATAAACCAATTATCCAATCATTCCCTTGACTTTCTGGGTTATCGTTCAAGTGTGCGG
CTAAAGCCTTCAATGGTACGCAGTCAAATGCTAGAAAATGCATTTATAATTGAAAATGCTATTAAGAAGT
TTGAGACTATTGTTCCAATTATGCCTTTGATTGGATCATTGGCTAAATCTAAATTTTGTAATGCATTGGG
GCATCCTATTGGTAAGGCGATTTGGGCCGATTTCTCAGATTCTGATATTATTGACCGCTTTGGGCGTATA
TACAGAAATCTTTCTCATTATCATAGTGGATCTTCAAAAAAAAAGAGTTTGTATCGAGTAAAGTATATAC
TTCGACTTTCTTGTGCTAGAACTTTAGCTCGTAAGCATAAAAGCACTGTACGTGCTTTTTTGAAAAGATT
CGGCTCGGAATTATTAGAAGAATTCTTTACGGAAGAAGAACAAGTTTTTTCCCTGACCTTTCCAAGGGTT
TCTTCCATTTCGCGAAGGTTATCTAGAAGGCGGATTTGGTATTTGGATATTATTTGTATCAATGATTTGG
CCAATCATGAATGATTCGTTATGAAACCTTGTAAATATAAATTTCATCACTAAATAATCTAATAAATAAT
GTAAATAATGAAGAGCTAACAAAAAATTATTTCTTTCTATTCTGAAATGTTGATGTAGTATGTAGTAAGG
ATGAAATCAACTGAGTATTCAATCTTTTCTTGTCTAATGAAGGAACTGAGTTTTAGATGTATACAGAGGG
AAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGATTTTTACTTATTTAACTTTAACAAGG
AAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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