The detailed information of tRNA gene sequence


Sequence ID>CHL090800057
Genome IDAP008956
Search identical group
Phylum/ClassViridiplantae
SpeciesPopulus alba
Start position on genome 4314
End posion on genome 1686
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
atttgtattT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATta
Downstream region at tRNA end position 
taaccattat
Secondary structure (Cloverleaf model)
>CHL090800057	Lys	TTT
                   T      ATta taaccattat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2555 (in A-loop)
GTGCGGCTAACAGCTTTTACACATTTGTACGAAGAAAGGGATTCGTCCATACCATCGGTATTATTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGAGAATTCTGAGAAT
ATTTGATTCTTACCGGATCGGCTCCAAACAAACCTTGTTTGAATTCTTGGTGCGTAACATAAAAACAAAT
GAATTCAAATTCAAAGTTGGGGTTGGGTCGAGTTAATAAATGGACAGAGCTCCGCGGCTCCAATTATAGG
GAAATAAAAAAGCAACGAGCTCCCGTTCTTAATTTGAATGATTTTCCGATCTAATTAGACGTTAAAAATA
GATTAGTGCCTAGTGCGGGAAAAGCTTTTTCTTGAGTGGATTTTCGATTTTTTTAATGAGTCCTAACTAT
TAGCTATTCTCCACTATGAAGGGGAGTTGAATGTGTAGAAGAAAAAGTATATTGATAAAGCAATTTTTTT
TTTCCAAAATCAAAAAAGAGTGATTGACTTGAAAAATTAAAGGATTTCTAGTCACCTATTACCCTATAAA
TGAACATAAACCAATTAGAAATGAACATAAACCAATTAGATGGAAAAAAGAGAGGATAGAGGGTCCGTTG
GTGAGTTTAACTATTTCCGAGGTATCTATTCTTTTTATATTATACTATTTTGTTTTTATGGTATCGCACT
ATGTATCATTTAATAACCCAATAAACTCCCTATCTTTGCTTCAATCAAATCGAATTAAAAATGAAAATAG
AGAAATCTCAAAGAAATTTAGAAATAGATAGATCTCGAAAAAATGACTTCCTATACCCACTTATCTTTCG
GGAGTATATTTATACATTTGCTCATGATCGTGACTTAAATAGATCTATTTTGTTAGAAAATGTAAGTTAT
GACAATAAATATAGTTTACTAATCGTAAAACGTTTAATTACTCGAATGTATCAACAGAATCATTTGATTA
TTTCTGCTAATGATTCTAACCAAAATACATTTTTTAGGTATAACAAAAATTTGTATTTTCAAATGATATC
GGAGGGGTTTGCAGTTATTGTGGAAATTCCATTTTCCTTACGATTAGTATCCTCTTTAGAAAGATCAGAA
ATAGTAAAATCTCATAATTTACGATCAATTCATTCAATATTTCCTTTTTTAGAGGGCAAATTCCCACATT
TAAATTATCTGTCAGAGGGACTAATACCGTACCCCATCCATCTAGAAAAATTGGTTCAAATCCTTCGCTA
TTGGGTGAAAGATCCCTCCTCTTTGCATTTATTACGACTCTTTCTTCACGAGTATTGGAATTTGAACAGT
CTTATTATTCCAAAGAAATCTATTTCCTTTTTTGTAAAAAAGAATCAAAGATTCTTCTTGTTCTTATATA
ATTCTCATGTATATGAATACGAGTCCGTTTTCTTTTTTCTTTGTAAGCAATCCTTTCATTTCCGATTAAC
ATTTTATCAGGTCTTTCTTGAGCGAATATATTTCTATGGAAAAATAGAACATTTTGTAGAAGTCTTTACT
AAGGATTGGGGGGACAGCCTATGCTTGCTCAAGGATCCTTTCATACATTATATTAGATATCAAGGAAAAT
CCATTTTTGTCTCAAAGGATACGCCTCTTCTGATGAAAAAATGGAAATATTACCTTGTCAATTTATGTCA
ATGTCATTTTGATGTGTGCTTTCAACCCCAAAAGATCCATATAAACCCATTTTCATTATACAAGCATTCT
TTCGCCTTATTAGGTTATCTTTCAAGTTCAAGTGTACGACTAAACCTTTCAGTGGTACGGAGTCAAATGC
TAGAAAATGCATTTCTAATGGATAATATTATGAATAAACTCGATACAACAGTTTCAATTATTCCTTTGAT
TGGATCATTAGCAAAAATGAAATTTTGTAACGCAGTAGGACATCCCATTAGTAAACCGACCTGGGCCGAT
TTTTCAGATTCTGATATTATCGACCGATTTGTCCGTATATGCAGAAATCTTTCTCATTATTATAGCGGAT
CCTCAAGAAAAAAGAGTTTGTATCGAATAAAATATATACTTCGACTTTCTTGTGTTAAAACGTTGGCTCG
TAAACACAAAAGTACTGTACGCATTTTTTTGAAAAGATTAGGTTCAGAATTATTGGAAGAGTTTTTTACG
GAGGAAGAGCAAATTATTTTTTTGATCTTTCCAAGAGCTTCTTCTATTTCACAAAAGTTATATAGGGGGC
GGGTTTGGTATTTGGATATTATTTGTATCAACGAGCTGTCCAATCATGAATAATTGGTTATGAAAACATG
GAAATCGAAAATATCCCTAAACTAAAAACTAAATAGGGATAACAAAAGAAATCATCCATTTCCATTATGA
AATGCTCATACAATATACGAGTAAAGATTGAGTAAATGAGTATTTATCGTTCCGTCGGGGGAGGGAACTG
AGTTTTAGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGTTTTT
AAACTATTTTTTAACAAAGAAATTCTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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