The detailed information of tRNA gene sequence


Sequence ID>CHL090800059
Genome IDAP009123
Search identical group
Phylum/ClassViridiplantae
SpeciesGossypium barbadense
Start position on genome 4435
End posion on genome 1829
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
aatttttttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAttt
Downstream region at tRNA end position 
ttagtatcat
Secondary structure (Cloverleaf model)
>CHL090800059	Lys	TTT
                   c      Attt ttagtatcat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2535 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAGGGATTCGTTCAGACCATCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAGGAGGGGATGGAAAAAAGAGCATGTCGTAGCAATGGAGAATTCTAAGAAT
CCTTTTTTTCCGGATCATTCCAAAAAAACCGTTTTTGAATTTTTGGTGCGGAACAAAAAAAATGAATTGA
ATTCAAAGTTGGGTCGAGTGAATAAATGGATAGAGCTCTACGGCCCCAATTATAGGGAAACAAAAAGGAA
CGAGCTTCTGTTCTCAATTTGAATGATTACCTGATCTAATTAAACGTTAAAAATAAATTAGTGCCTAATG
TGGTAAAGGTTTTTCTCATGAGTAAATTATCGATTTTTTTATGAGTCCTAATTATTAGGCATTCCCTTTA
TGGGTTAGCCATGAATGTGTAGAAGAAGCAGTATATTGATAAAGAAAAGATATTTTTTTCCAAAATCAAA
AGAGCGATTGGGTTGAAAAAATAAAGGATTTCTAACCGTCTTCTTATCCTATAACGAACATAAATCAATT
AGATGGCAAAAGATAGGATAGAGAATCCGTTGATGAATCCGCCTGTCTCCGAGGTATCTTTTCTTTTCTT
ACTATAATACCTTGTTTTGACTGTATCGCACTATGTATCATTTAATAACCGAATAGATCCCCTATCTTTG
GTTCAAATCGAATTTGAAATGGAGGAATTTCAAGTATATTTAGAACTAAATAGATCCCGCCGACACGATT
TCCTATACCCACTTATTTTTCGGGAGTATATTTATGCACTTGCTCATGAGCATGGTTTAAATAAATCGAT
GATTTTTTTTGAAAATCAGGGTTATGGTAATAAATTCAGTTCACTAATTGTGAAACGTTTAATTCTTCGA
ATGGATCAACAGAATCGTTTGATTAGTTCTGCTAATGATTCCAACCAAAATCCGGTTTTTGGGCACAACA
ATAATTTGTATTCTCAAATGATAGCGGTAGGATTTGCAGTCATTGTGGAAATTCCATTTTCCTTACGATT
AATATCTTACTCACAAGGGGCAGAAGTCGCAAAATCTCATAATTTACAATCAATTCATTCAATATTTCCT
TTTTTAGAGGACAAATTCTCACATTTAAATTATGTGTTAGAGGCACTAATACCTCATCCCATCCATCTAG
AAATCTTAGTTCAAGCCCTTCGCTACTGGGTAAAAGATGCTTCTTCTTTGCATTTATTACGGTTCTCTCT
CTACGAGTATTGTAATTTGAAGAGTTTTATTACTCCAAAGAAATCTATTTCGATTTTTAATCCAAGATTA
TTCTTGTTCCTATATAATTCTCATACATGTGAATACGAATCCATTTTCCTTTTTCTCCGTAATCAATCTT
CTCATTTACGATCAACATCTTCTGGGGTCTTTCTTGAACGAATTTTTTTCTATGGAAAAATAAAGTATCT
TGGCGAAGTCTTTTATAATGATTTTCAGAACAACCTATGGTTGTTCAAAGACCCTTTCATACATTTTATT
AGGTATCAAGGAAAGTCAATTCTGTCCTCAAAGGATACGTCTCTTCTGATCAATAAGTGGAAATATTACT
TTGTCGATTTATGGCAATATTATTTTTACCTGTGGTCTCAATCAGGAAGAGTCCGTATAAATCAATTATC
TAAATATTCTCTCGACTTTCTGGGCTATCTTTCAAGTGTGCGATTAAATCCTTCAGTGGTACGGAGTCAA
GTGCTAGAAAATTCATTTCTAATAGATAATGCTGTGAAGACGTTGGATACAAGAATTCCAATTATTTCGC
TCATTGGATCATTGTCTAAGGCGAAATTTTGTAACACATTAGGGCATCCCATTAGTAAGCCGACGTGGGC
CGATTCCCCCGATTCTGATATTATTGACCGATTTGTGCGGATATCCAGAAATCTTTCTCATTATCACAGT
GGATCTTCAAAAAAAAAAAGTTTGTATCGAATAAAATATATACTTCGGTTTTCTTGTGTTAAAACTTTGG
CTCGTAAACACAAAAGTACTGTCCGTGCTTTTTTGAAAAAATTAGGTTCGGAATTTTTGGAAGAATTCTT
TACGGAAACGGAAGAAGAACATGTTATTTCTTTGATCTTCCCAAGAGGTTTTTTTGCTATGCGAAAGGTC
TATAGGGGACGAATTTGGTATTTGGATATTATTTGTATCAATGCTCTGGTCAATCATTCATGATTGGTTA
TGAAATTATGTAAATTCAATTATCAATTACAATAAAAATGGTAATTTTACGAAATGATGAAGAGATAACA
AATGAATTTATTCATTTCTAGTATTAAATGTTCAGGCAGTAAGAATAAGAGGGCCGAGTATTCCGCTTTT
TTTTTAGAGTCCTGTTTAGGGAATAAACAGGGTTTTAGATGGATACATAGAGAAAGCCGTGTGCAATGAA
AATGCAAGCACGGTTTGGGGAGGGATTTTTTTTTTCTTTTAAATTTCAATTTATTTAATTGAAACAAGGA
AATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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