The detailed information of tRNA gene sequence


Sequence ID>CHL090800063
Genome IDAP009366
Search identical group
Phylum/ClassViridiplantae
SpeciesAethionema cordifolium
Start position on genome 4273
End posion on genome 1634
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttgtttttgg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGATCAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tggatcatag
Secondary structure (Cloverleaf model)
>CHL090800063	Lys	TTT
                   g      ACta tggatcatag
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     CAGTT
                    C   T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2567 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAAGGATTCGTCCAGATCTGCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAATGGAATGAATGGAAAAAATAGCATGTCGTATCAAGGGAGAATTAAGATAAC
ATTTTTTTTTGCTTTCCTCATCGGTACAACTTTGTGGTCGGTGTGGAACAAAAAAAATAAATTCCAATTT
GGGTCGAGTAAATAAATATAAATGGATGGATAAAAAACCCTGTTTTCCTGAGTCCAGGAAAAAAAAGAAA
CGAGCTTCCATTCGTAATTTGAAAAATTACCCGATCTAATTAAATGTTAAAAATAGATTAGTGCCTAGTA
CGGGTATGGGAAGGAGTTTTTTTCTTGCGTGTTATTATCAATTTTTTCATGAGTCCTTATTATTTTTTCC
GTATTCTGTTTGGGTTAGGTTGGCGATGGATGTGTAAAAGAAGCAGTATATTGATAAAAAACTATATATT
TCCAAAATCAAAAGAGCGATTAGTTTCCAAAAATAAAGGATTTCTAATCATCTTGTTTTGTTATTTTAGA
ATATAACGAACATAAACTTATTAAAGATAGAGAATCCGTTTAGCAGTCTACCTGTTTATGAGGTATCTAT
TGCTTTCGTAGTCTAATACCTTGTTTTGACTGTGTCGCACTATGTGTCATTTCAGAACTCAAGAAAATCA
AGACTTTACCTTCACAGTTCAAATCGAATTTCAATCCAAATGGAGGAATTTAAAGGATATTTCGAGTTCG
ATAGAACTCGGCAACAAAATTTTCTATATCCACTTTTTTTTCGGGAGTCTTTTTATGTACTTGCTTATGA
TCATGGTTTAAATAGATTAAATAGAAATCGATCTATTTTCTTGGAAAATGCGGATTATGACAAAAAATAT
GGTTCACTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCATTTGATTATTCCCACTAAGG
ATTTGAATCACAATCCCTTTTTTGGGCATACCAATCTTTTCTATTATCAAATGATATCTGTCTTATTTGC
AGTTATTGTGGAAATTCAATTTTCCTTAAAATTAGTATCCTCTTTCGAAGGAAAACTGCTAAAAAAATCT
TATAATTTAAAATCAATTCATTCCTTATTTCCCTTTTTAGAAGACAAATTATTACATTTTAATTATGTGG
TAGATGTACGAATACCTTACCCTATCCATCTGGAAATCTTAGTTCAAACCCTACGTTACCGGGTAAAAGA
TGCTTCTTCTTTGCATTTTTTTCGGTTCTGTCTATACGAGTATTGCAATTATAAGAATTTTGATATTCAA
AAAAAATCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATACGAATCCC
TCTTTCTTTTTCTACGCAAGCGGTCTTCTCATTTACGATCGACATCTTCTGAAGTAGTTTTTGAGCGAAT
TTTATTCTATGGAAAAATACAACATCTTGTAAAAGTTTTTGTTAATTTTCCGTCGATCCTAGGTTTTCTC
AAGGATCCTTTGATACATTATGTTAGATATCACGGAAAATGCATTCTGGCAACAAAAGATACGCCGCTTC
TGATGAATAAAAGGAAATATTACTTTGTTAATTTATGGCAATCCTATTTTTCCGTATGGTTGCAATCGGA
AAAGGTCAATATAAATCAATTATCTAAAGATACTTTAGAGTTTCTGGGCTATCTATCAAGTTTGCAATTA
AATCCTTTAGTGGTACGTAGTCAAATGCTAAAAAACTCGTTTCTAATAGATAATGTTCGAATCAAATTCG
ATACAAAAATTCCAATTTCTTCTATTATTGGATCATTGTCTAAAGAAAAATTTTGTAATGTATTAGGGCA
TCCCGTTAGTAAATCGAGCTGGACGGATTCATCAGATTCTGAGATTCGTGAACGATTTGTGCGTATATGC
AGAAATCTTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAAATTTGTATCGAATAAAATATATACTTC
GTCTTTGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTGCGCGCTTTTTTAAAAAGGTTGGG
CTCGGGTTTATTGGAAGAATTCCTTACCGGGGAAGGACAAATTATTTCTTTAATCTTCCCAAGAAGTTAT
TATGCTTCCAAAAGATTATATCGAAACCGAATTTGGTATTTGGATATTCTTTTTTTTAATGATTTGGTAA
ATCATGAATAAGTTGCTTATGAGACCTCATAAATCAAAATCAAATAGAAATTTGTTATAACTTATGAAGA
GATAACAAAAAAGCAATTCTTTTCTATTATCAAAAGTCATTTATTACTATTTCTATTTCTATTATTAAAT
GTTCATACAGTTAAGACTAAGATGTAATTTACTGAATATTTAATTTGAAGAGTTAGTAGGAACCAAAGAA
CCTTAGTTTTCTATGTACACATAGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGA
GTTTTTACCTGTTTTTTTTATTTTAACAAGGAAATTCTCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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