The detailed information of tRNA gene sequence


Sequence ID>CHL090800071
Genome IDAP009369
Search identical group
Phylum/ClassViridiplantae
SpeciesArabis hirsuta
Start position on genome 4489
End posion on genome 1851
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttgttttttg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tgaatcatat
Secondary structure (Cloverleaf model)
>CHL090800071	Lys	TTT
                   g      ACta tgaatcatat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2566 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAAAAAAGGATTCGTCCAGATCTGCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAATAGCATGTCGTATGAAGGGAGAATTCAGATAAA
ATTTTTTTGCTTTCCTGATCGGTACAACCTTGTTTTCGGTGTCGAAAAAAAAAAAAAAAAAAGAATTCCA
CTTTGGGTTGAGTGAATAAATATAAATGGATGGATAAAAAAACCAGTTTTCCTGATTCCAGGAAAAAAAA
AGAAACGAGCTTCCATTCGTAATTTGAAAAATTACCCGATCTAATTAAATGTTAAAAATCAATTAGTGCC
TAATACGGGTATGGGAAGGAATTTTTTTCTTGCGTGTTATTATCAATTTTTTCATGAGTCCTAATTATTT
TTTCCCTAGTCCGTTTGGGTTAGGTTGGAGATTGATGTGTAAAAGAAGCAGTATATTGATAAAAAAATAT
ATATTTCCAAAATCAAAAGAGCGATTAGGTTAAAAAAAAATAAAGGATTTCTAATCATCTTGTTTTGTTA
TTCTATAATATAATGAACAGAAACTTATTAGAGAATCTGGTTAGCAGTCTACCTGTTTATGAGGTATTTA
TTGCTTTCGTAATCTAATACCTTATTGTGACTGTATCGCACTATGTATCATTTCAGAACTCAAGAAAATA
AAGACTTTACTTTTAGTTCAAATTGAATTTCAATCCAAATGGAGAAATTTCAAGGATATTTAGAGTTCGA
TGGGGCTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGAT
CACGGTTTAAATAGATTAAATCAAAATCGCTCCATTTTCTTGGAAAATGCAGATTATGACAAAAAATATA
GTTCCCTAATTGTGAAACGTATAATTTTGCGAATGTATGAACAAAATCGTTTGATTATTCCCACTACGGA
TTTGCACAAAAATCCCTTTTTGGGGCATACCAATCTTTTGTATTATCAAATGATATCTGTTTTATTTGCA
GTGATTGTAGAAATTCCGTTTTCCCTAAGATTAGGATCCTCTTTCGAAGGAAAACAATTAAAAAAATCTT
ATAATTTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAATTATCACATTTTAATTATGTGTT
AGATGTACTAATACCTTACCCGATTCATCTAGAAGTCTTGGTTCAAACCCTACGTTACCGGGTAAACGAT
GCCTCTTCTTTGCATTTTTTTCGGTTCTGTCTATACGAGTATTGCAATTGGACGAATTTTGATATTAAAA
AAAAATTCATTTTGAATCCAAGATTTTTATTGTTCTTATATAATTCTCATATATGTGAATACGAATCCAT
CTTTTTTTTTCTACGCAAGCGGTCTTCTCATTTACGATCGACAGCTTATGAAGTCTTTTTTGAGCGAATT
TTGTTCTATGGAAAAATACAAAATTTTTTAAAAGTCTTTGTTAAAAATTTTCCAGCGATGCTAGGGTTGT
TCAAGGATCCTTTCCTACATTATGTTAGATATCACGGAAAAAGTATTCTGGCAACAAAGGATACGCCGCT
TCTGATGAATAAATGGAAATTTTATTTTGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTTCAATCG
CAAAAGGTCAATATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTTTGCGAT
TAAATCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCGTTTCTAATAGATAATATTAGAATCAAATT
GGATAGCAAAATTCCAATTTATTCGATTATTGGATCGTTGGCTAAAGATAAATTTTGTAATGTATTAGGG
CATCCAATTAGTAAAGCGACCTGGACAGATTCGTCAGATTCTGATATTCTCAACCGATTTGTGCGTATAT
GCAGAAACATTTCTCATTATTACAGCGGATCTTCAAAAAAAAAGAATTTGTATCGAATAAACTATATACT
TCGTCTTTGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTTAAAAAGGTTG
GGCTCGGGTTTATTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTCCCAAGAAGTT
ATTATGCTTCTAAAAGATTATATCGAGTGCGGATTTGGTATTTGGATATTCTTTATCTTAATGATTTGGT
CAATCATGAATAATTGGGTTCGGAGATCTCATGAATTAAATCAAAATTTATCATAACTTATGCAGAGATA
ACAAAAAAAACTCAATTCTTTTCTATTAGCAAATAGCAAAAGTCATTTATTTCTATTATTAAATGTTCAT
ACAGTAAGACTAAGATGAAATTTACTGAGTATTGAACTCGCAGTGCTATTTATAAGGAATCAAAGAAACT
GAGTTTTCTATGTATACATAGAGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTTT
TTTACCTTTTTTTTTTTCATTTTAACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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