The detailed information of tRNA gene sequence


Sequence ID>CHL090800074
Genome IDAP009370
Search identical group
Phylum/ClassViridiplantae
SpeciesBarbarea verna
Start position on genome 4321
End posion on genome 1691
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tgtttttgag
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tggatcatat
Secondary structure (Cloverleaf model)
>CHL090800074	Lys	TTT
                   g      ACta tggatcatat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2558 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAAGGATTCGTCCAGATCCGCGGTAAAGTTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAATAGCATGTCGTATCAAGGGAGAATTCAGATAAC
ATTTTTTTTTGCTTTCCTGATCGGTACAACCTTCGTTTTCGATGTCGAAAAAAAAAAAAAAAGGAATTCC
AATTTGGGTCAAGTGAATAAATATAAATGGATGGATAAAAAACCCAGTTTTCCTGATTCCAGGAAAAAAA
AAAGAAACGAGCTTCCATTCGTAATTTGAAAAATTACCCGATCTAATTAAATGTTAAAAATAGATTAGTG
CCTAATACGGGTATGGGAAGGAATTTTTTTCTTGCGTGTTATTATCAATTTTTCATGAGTCCTAATTATT
TTTTTCCCTAGTCCGTTTGGGTTAGGTTGGAGATGGATGTGTAAAAGAAGCAGTATATTGATAAAAAAAA
ATATATATATTTCCAAAATCAAAAGAGCGATTAGGTTAAAAAAATAAAGGATTTCTAATCATCTTGTTTT
GTTATTCTATAATATAACGAACAGAAACCTATTAAAGATAGAGAATCCGGTTAGCAGTCTACCTGTTTAT
GAGGTATCTATTGCTTTCGTACTGTAATACCTTATTTTGACTGTATCGCACTATGTGTCATTTCAGAACT
CAATAAAATAAAGACTTTACCTTCAGTTCAAATCGAATTTCAATCCAAATGGAGAAATTCCAAGGATATT
TAGAGTTCGATGGGGCTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACT
TGCTTATGATCATGGTTTAAATAGATTAAATAGAAATCGCTCTATTTTATTCGAAAATGTGGATTACGAA
AAAAAATATAGTTCATTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTC
CCACTAAAGATTTGAACCAAAATTACTTTTTTGGGCATACCAGTCTTTTCTATTATCAAATGATATCTGT
TTTATTTGCAGTGATTGTAGAAATTTCATTTTCCCTAAGATTAGGATCCTCTTTCGAAGGAAAACAATTA
AAAAAATCTTATAATTCACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACGAGTTATCACATTTTA
ATTATGTGTTAGATGTAGTAATACCTTATCCCATCCATCTAGAAATCTTAGTTCAAACCCTACGTTACCG
GGTAAAAGATGCCTCTTCTTTGCATTTTTTTCGATTCTGTCTATACGAATATTGCAATTGGAAGGATTTT
TCTATTAAAAAAAAATCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAAT
ACGAATCCATCTTTTTTTTTCTACGCAAGCGGTCTTCGCATTTACGATCGACATCTTATGAAGTCCTTTT
TGAGCGAATTTTATTCTATGGAAAAATACAACATTTTTTAAAAGTCTTTGTTAAAAATTTTCCGGCGATC
CTAGGGTTGCTCAAGGATCCTTTAATACATTATGTTAGATATCACGGAAGATGCATTCTGGCAACAAAGG
ATACGCCGCTTCTGATGAATAAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCCGTATG
GTTTCAATCGCAAAAGGTCACTATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCA
AGTTTGCGATTAAACCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATATCTAATAGATAATGTTA
GAATCAAATTGGATAGCAAAATTCCAATTTCTTCTATTATTGGATCATTGGCTAAAGATAAATTTTGTAA
TGTATTAGGGCATCCCATTAGTAAAGCGGTCTGGACAGATTCATCAGATTCTGATATTCTCAACCGATTT
GTGCGTATATCCAGAAATATTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAAATTTGTATCGAATAA
AATATATACTTCGTCTTTGTTGTGTTAAAACTTTAGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTT
AAAAAGGTTAGGCTCGGGTTTATTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTC
CCAAGAAGTTATTATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTA
ATGATTTGGTCAATCATGAATAATTGGGTTCTGAGACCCCATAAAGTAAATCGAAATTTATCATAATTTA
TGCAGAGATAACAAAAAAATAAATGATTTTCTATTATAAAAAGTCATCTATTTCTATTATTAAATGTTCA
TACAGTAAGACTAAGATGAAATTTACTGAGTATTGAATTCGGAGTCCTATTTATAAGGAACCAAAGAAAC
TGAGTTTTCTATGTATACATAGAGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTT
TTTTACCTTTTTTTTAACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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