The detailed information of tRNA gene sequence


Sequence ID>CHL090800077
Genome IDAP009371
Search identical group
Phylum/ClassViridiplantae
SpeciesCapsella bursa-pastoris
Start position on genome 4330
End posion on genome 1705
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttatttttgg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACtt
Downstream region at tRNA end position 
tggatcatat
Secondary structure (Cloverleaf model)
>CHL090800077	Lys	TTT
                   g      ACtt tggatcatat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2553 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTACGAAGAAAAGGATTCGTCCAAATCTGCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAATAGCATGTCGTATCAAGGGAGAATTCAGATAAC
CTTTTTTTTTGCTTTCCTGATCGGTACAATCTTATTTTGATGTCGAAAAAAAAAAAAAGAATTCTAATTT
GGGTCAAGTGAATAAATATAAATGGATGGATAAAAAAACCAGTTTTCCTGATTCCAGGAAACAAAAAGAA
ACGAGCTTCCATTCGTAATTTGAAAAATTACCCGAACTAATTAAATGTTAAAAATAGATTAGTGCCTAAT
ACGGGTATGGGAAGGCATTTTTTTCTTGCGTGTTATTATCAATTTTTTCATGAGTCCTAATTATTTTTTT
ACTAGTCCATTTGGATTAGGTTGGAGTGTGTAAAAGAAGCAGTATATTGATAAAAAATATATATATTTCC
AAAATCAAAAGAGCGATTAGGTTCAAAAAAATAAAGGATTTCTAATAATCTTGTTTTGTTATTCTATAAT
ATAGAATATAGAACGAACAGAAACCTATTAGAGAATCCGGTTAGCAGTCTACCTGTTTATGAGGTATCTA
TTGCTTTTGTAGTCTAATACCTTATTTTAACTGTATCGCACTATGTGTCATTTCAGAACTCAAGAAAATA
AAGACTTTACCTTCAGTTCAAATATAATTTCAATCCAAATGGAGAAATTTCCAGGATATTTAGAGTTCGA
TGGGGCTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGAT
CATGGTTTAAATAGATTAAACAGAAATCGCTCTTTTTTCTTGGAAAATACGGATTATGACAAAAAATATA
GTTCACTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCCACTAAGGA
TTTGAACCAAAATTCCTTTTTGGGGCATACCAGTCTTTTCTATTATCAAATGATATCTGTTTTATTTGCA
GTGATTGTAGAAATTCCATTTTCTAAAAGATTAGGATCCTCTTTTCAAGGAAAACAATTAAAAAAATCTT
ATAATTTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAATTAGCACATTTTAATTGTGTGTT
AGATGTACTAATACCTTACCCCATCCATCTAGAAATCTTGGTTCAAACCCTACGTTACCGGGTAAAAGAT
GCCTCTTCTTTGCATTTTTTTCGGTTCTGTTTATACGAGTATTGCAATTGGAAGAATTTTGATAAAAAAA
AAAAATCAATTTTGAATCCAAGATTTTTATTGTTCTTATATAATTCTCATGTATGTGAATACGAATCCAT
CTTTTTTTTTCTCCGCAAGCGGTCTTCGCATTTCCGATCGACATCTTATCAAGTTCTTTTTGAACGAATT
TTATTCTATGGAAAAATACAACATTTTTTTAAAGTTTTTGTTAATAATTTTCCGGCAATCCTAGGGTTGC
TCAAGGATCCTTTCATACATTATGTTAGATATCACGGAAGATGCATTCTGGCAACAAAGGATACGCCGCT
TCTGATGAATAAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCCTTATGGTTTCAATCG
CAAAAGGTCAATATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTTTGCGAC
TAAATCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATTTCTAATAGATAATGTTAGAATCAACTT
GGATAGCAAAATTCCAATTTCTGCTATTATTGGATCATTGGCTAAAGATAAATTTTGTAATGTATTAGGG
CATCCCATTAGTAAAGCGACCTGGACGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGCGTATAT
GCAGAAATATTTCTCATTATTACAGCGGATCTTCAAAAAAAAAGAATTTGTATCGAATAAAATATATACT
TCGTCTTTGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTTAAAAAGGTTG
GGCTCGGGTTTATTGGAAGAATTCCTTACGGGCGAAGACCAAGTTCTTTCTTTAATCTTCCCACGAAGTT
ATTATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTATTTATCTTAATGATTTGGT
CAATCATGAATAATTGGGTTCTGAGACCCCATAAATGAAATCGAAATTTATCATAATTTAGGCAGAGATA
ACAAAAAAAAATCAATTCTTTTTTATTATCAAAATTGATTTCTATTATTAAATGTTCATACAGTAAGACT
ATGATTAAATTTACTGAGTATTGAATTTGGGTTCCTATTTATAAGGAACCAAAGAAAGTGAGTTTTCTAT
GTATACATAGAGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTTTTTTACCTTTTT
TTTTCATTTTAACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK