The detailed information of tRNA gene sequence


Sequence ID>CHL090800080
Genome IDAP009372
Search identical group
Phylum/ClassViridiplantae
SpeciesCrucihimalaya wallichii
Start position on genome 4312
End posion on genome 1690
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttgtttttgg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tggatcatat
Secondary structure (Cloverleaf model)
>CHL090800080	Lys	TTT
                   g      ACta tggatcatat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2550 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAAGGATTCGTCCAAATCCGCGGTAGAGTTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAATAGCATGTCGTATCAAGGGAGAATTCAGATAAC
ATTTTTTTTTCTTTCCTGATCGGTACAACCTTGTTTTCGATGTCGAAAAAAAGAATTCCAATTTGGGTCA
AGTGAATAAATATAAATGGATGGATAAAAAACCAGTTTTCCTGATTCCAGGAAAAAAAAAAGAAACGAGC
TTCCATTCGTAATTTGAAAAATTACCCGATCTAATTAAATGTTAAAAATAGATTAGTGCCTAATACGGGT
ATGGGAAGGCATTTTTTTCTTGCGTGTTATTATCAATTTTTTCATGAGTCCTAATTATTTTTTTACCTAG
TCCATTTGGGTTAGGTTGGAGTGTGTAAAAGAAGCAGTATATTGATAAAAAATATATATATATATTTCCA
AAATCAAAAGAGCGATTAGGTTAAAAAAATAAAGGATTTCTAATCATCTTGTTTTGTTATTCGATAATAT
AACGAACATAAACCTATTAAAGATAGAGAATCCGTTTAGCAGTCTACCTGTTTATGAGGTATCTATTGCT
TTCGTAGTCTAATACCTTATTTTGACTGTATCGCACTATGTGTCATTTCAGAACTCAAGAAAATAAAGAC
TTTACCTTCAGTTCAAATCGAATTTCAATCCAAATGGAGAAATTGCAAGGATATTTTGAGTTCAATGGGG
CTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGATCATGG
TTTAAATAGATTAAATAGAACTCGCTCTATTTTCTTGGAAAATACGGATTATGACAAAAAATATAGTTCA
CTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCGACTAAGGATTTGA
ACCAAAATCCCTTTTTGGGGCATACCAGTCTTTTCTATTATCAAATGATATCTGTTTTATTTGCAGTGAT
TGTAGAAATTCCATTTTCCCTAAGATTAGGATCCTCTTTCCAAGGAAAACAATTAAAAAAATCTTATAAT
TTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAATTAGCACATTTTAATTATGTGTTAGATG
TACTAATACCTTACCCCATCCATCTAGAAATCTTGGTTCAAACCTTACGTTACCGGGTAAAAGATGCCTC
TTCTTTGCATTTTTTTCGGTTCTGTCTATACGAGTATTGCAATTGGAAGAATTTTTATATAAAAAAAAAA
TCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATACGAATCCATCTTTT
TTTTTCTACGCAAGCGGTCTTCGCATTTACGATCGACATCTTATGCAGTCCTTTTTGAGCGAATTTTATT
CTATGGAAAAATACAACATTTTTTAAAAGTTTTTGTTAATAATTTTCCGGCGATCCTAAGGTTGCTCAAG
GATCCTTTCATACATTATGTTAGATATCACGGAAGATGCATTCTGGCAACAAAGGATACGCCGCTTCTGA
TTAATAAATGGAAATATTTTTTTGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTTCAATCGCACAA
GGTCAATATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTTTGCGATTAAAC
CCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATTTCTAATAGATAATGTTAGAATCAAATTGGATA
GCAAAATTCCAATTTCTTCTATTATTGGCTCATTGGCTAAAGATAAATTTTGTAATGTATTAGGGCATCC
CATTAGTAAAGCGACTTGGACGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGCGTATATGCAGA
AATATTTCTCATTATTACAGCGGATCTTCAAAAAAAAAGAATTTGTATCGAATAAAATATATACTTCGTC
TTTGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTTAAAAAGGTTGGGCTC
GGGTTTATTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTCCCAAGAAGTTATTAT
GCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTAATGATTTGGTCAATC
ATGAATAATTGGGTTCTGAGACCCCATAAATGAAATCGAAAGTGATCATAATTTATGCAGAGATAACAAA
AAAATCAATTATTTTTTATTATCAAAAGTCATTTATTTCTATTATTAAATGTTCATACAGTAAGACTAAG
ATTAAATTTACTGAGTATTAAATTCGGCATCCTATTTATAAGGAACCAAAGAAACTTAGTTTTCTATGTA
TACATAGAGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTTTTTTACCTTTTTTTT
TCATTTTAATAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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