The detailed information of tRNA gene sequence


Sequence ID>CHL090800086
Genome IDAP009374
Search identical group
Phylum/ClassViridiplantae
SpeciesLepidium virginicum
Start position on genome 4214
End posion on genome 1613
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttgtttttgg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tggattatat
Secondary structure (Cloverleaf model)
>CHL090800086	Lys	TTT
                   g      ACta tggattatat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2529 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAAGAATTCGTCCAGATCTGCGGTAGAGTTTGTAA
GACCACGACTGATCCTAAAAGGAATGAATGGAAAAAATAGCATGTCGTATCAAGAGAGAATTCCGATAAC
TTTTTTTTTCTTTTCTCGTCGGTACAACCTTGTTTTCGATGTCGAAAAAAAAAAAGGAATTCCAATTTGG
GTCAAATGAATAAATATAAATGGATGGATAAAAAAACCAGTTTTCCTGATTCCAGGAAAAAAAAGAAACG
AGCTTCCATTCGTAATTTGAAAAATTACCCGATCTAATTTAATGTTAAAAATAGATTAGTGCCTAATACG
GGTATGGGAAGGAATTTTTTTCTTGCGTGTTATTATCAATTTTTTCATGAGTCCTAATTATTTTTTTCCC
TAGTCCGTTTGGGTTAGGTTGGAGATGGATGTGTAAAAGAAGCAGTATATTGATAAAAAATAGATATATT
TCCAAAATCAAAAGAGCGATTAGGTTAAAAAAATAAAGGATTTCTAATCATCTTGTTTTGTTATTGTAGA
ATATAACGAACAGAAACCTATTAAAGCTAGAGAATCCGGTTAGCAGTTTCCCTGTTTATGAGGTATCTAT
TGCTTTCATAGTCTAATACCTTATTTTGACTGTATCGCACTATGTGTCATTTCAGAACTCAAGAAAATCA
AGATTTTACCTTCAGTTCAAATCGAATTTCAATCCAAATGGAGAAATTTCAAGGATATTTAGAGTTCGAT
GGGGCTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGATC
ATGGTTTAAATAGATTAAATAGAAATCGCTCTATTTTCTTTGAAAATGCAGATTATGACAAAAAATATAG
TTCACTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCCACTAAGGAC
TTGAACCAAAATCACTTTTTGGGGCATACTAGTCTTTTCTATTATCAAATTATATCTGTTTTATTTGCAG
TGATTGTAGAAATTCCATTTTCCCTGAGATTAGGATCCTCTTTCGAAGGAAAACAATTAAAAAAATCTGA
TAATTTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAATTCTCACATTTTAATTATGTGTTA
GATTTACAAATACCTTACCCCATCCATCTAGAAATCTTGGTTCAAACCCTACGTTACCGGGTAAAAGATG
CTTCTTCTTTGCATTTTTTTCGGTTCTGTCTATACGAGTATTGCAATTGGAAGAATTTTTATATTAAAAA
AAAAGCAATTTTGAATCCAAGAATTTTCTTGTTCTTATATAATTCTCATATATGTGAATACGAATCCATA
TTTTTTTTTCTACGCAAGCGGTCTTCGCATTTACGATCAACATCTTATGAAGTCCTTTTTGAGCGAATAT
TATTCTATGGAAAAATACAACATTTTTTAAAAGTCTTTGTTAATAATTTTCCGGCGATCCTAGGGTTGCT
CAAGGATCCTTTCATACATTATGTTAGATATCACGGAAGATGCATTCTGGCAACAAAGGATACGCCGCTT
CTGATGAATAAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTTCAATCGC
AAAAGGTCAATATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATTTGTCAAGTTTGCGATT
AAACCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATTTCTAATGGATAATGTTAGAATCAAATTG
GATACAAAAATTCCAATTTCTTCTATTAGTCGATCATTGGCTAAAGATAAATTTTGTAATGTATTAGGGC
ATCCCATTAGTAAAGCGACCTGGACGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGCGTATATG
CAGAAATATTTCTCATTATTACAGCGGATCTTCAAAAAAAAATAATTTGTATCGAATAAAATATATACTT
CGTCAAAGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGGGCTTTTTTAAAAGGGTTGG
GCTCGGGTTTATTGGAAGAATTCCTTACGGGGGAAGACCAAATTCTTTCTTTAATCTTCCCAAGAAGTTA
TTATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTAATGATTTGGTC
AATCATGAATAATTTGGTTCTGAGACCTCATAAATTAAATCGAAATTTATCATAATTTATGCAGAGATAA
CAAATAAATTATTTTCTATTATTAAATGTTCATACAGTAAGACTAAGATGAAATTTACTGAGTATTGAAT
TCGGAGTCCTATTTATAAGGAACCAAAGAAACTTAGTTTTCTATGTATACATAGAGAAAGCTGTGTGCAA
TGAAAAAATGCAAGCACGGTTTGGGGAGGGGTTTTTTACCTTTTTTTTTTCATTTTAACAAGGAAATTAT
CTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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