The detailed information of tRNA gene sequence


Sequence ID>CHL090800091
Genome IDAP009375
Search identical group
Phylum/ClassViridiplantae
SpeciesLobularia maritima
Start position on genome 50108
End posion on genome 49423
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
cacaaacaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTAGGTAGAGCACCTCGTTTACACCGAGCAGGTCTACGGTTCGAG
TCCGTATAGCCCTAaac
Downstream region at tRNA end position 
taagaaattt
Secondary structure (Cloverleaf model)
>CHL090800091	Val	TAC
                   a      Aaac taagaaattt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     AGGTC
                    C   C
                    C - G
                    T - A
                    C - G
                    G - C
                  T       C *
                  T       A
                    T A C
intron: position=39, length=612 (in A-loop)
GTGCGCCAAAGTTTTTCAGAGGAGTCGATCACGCAATCAAACCAATTGATTGATCTTATTAATAAATCGA
TGTCTTACTCCATTCCTTTTTTTTTTAGGAAAAAAAGAGGAGAACAATAGCCTGACATTAGGTCCTATTA
AAGTACCCCGTTAGGTGGGGAATGAATAGAACCCATCGTTGATTTGAGATATTGATAGGGTGAAAATACC
CAGTCTACTTAATGCTAGGCAGAATGAGTATAAGGAACTCAAAAATGATCTTTTCGTCCTATGAACCTTA
AGGTGTATCAAGTTTCATGTTTGATTTTTTAATCAGGATGTTAGAGACTATATTTAACTTAAGTTGATCT
AGACCAAAAGCAAACCTACGTCAAGAGAACCCAACCCTTCTTTGAAACACTTTGGTAGTTCTTCTGTATT
GTATTAGAATTAAAAAATAATCAATCAGAGTACTTGGAACCATTGCTTATCTTTTTTTTTTTAAGAAAAA
ATATGGTAGACTAATTGATCTTTCTATCAGTTAATGAAAGAGCCCAATGCAAAAAAAAATGCATGTTGGG
TCTTTGAAAGAGTTCGAATCATTTTGATAATAATAAGTTCGAACTCTTTTAC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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