The detailed information of tRNA gene sequence


Sequence ID>CHL090800092
Genome IDAP009376
Search identical group
Phylum/ClassViridiplantae
SpeciesNasturtium officinale
Start position on genome 4337
End posion on genome 1706
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tttttttggg
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tggatcgtat
Secondary structure (Cloverleaf model)
>CHL090800092	Lys	TTT
                   g      ACta tggatcgtat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2559 (in A-loop)
GTGCGACTAGCATCTTTTACACATTTGTATGAAGAAAAGGATTGGTCCAGATCCGCGGTATAGTTTGTAA
GACCACGACTGATCCTGAAAGGAATGAATGGAAAAAATAGCATGTCGTATCAAGGGAGAATTCAGATAAC
ATTTTTTTTTTTGCTTTCCTGATCGGTACAACCCTCGTTTTCGATGTCGAAAAAAAAAAAAAGAATTCCA
ATTGGGGTCAAGTGAATAAATATAAATGGATGGATAAAAAACAAGTTTTCCTGATTCCAGGAAAAAAAGA
AACGAGCTTCCATTCGTAATTTGAAAAATTACCCGATCTAATTAAATGTTAAAAATAGATTAGTGCCTAA
TACGGGTATGGGAAGGAATTTTTTTCTTGCGTGTTATTATCAATTTTTCATGAGTCCTAATTATTTTTTT
TCCCTAGTCCGTTTGGGTTAGGTTGGAGATGGATGTGTAAAAGAAGCAGTATATTGATAAAAAAAATATA
TATATATTTCCAAAATCAAAAGAGCGATTAGGTTAAAAAATAAAGGATTTCTAATCATCTTGTTTTGTTA
TTCTAGAATATAACGAACAGAAACCTATTAAAGATAGAGAATCCGGTTAGCAGTCTACCTGTTTATGAGG
TATCTATTGCTTTCGTAGTCTAATACCTTATTTTGACTGTATCGCACTATGTGTCATTTCAGAACTCAAG
AAAATAAAGACTTTACCTTCAGTTCAAATCGAATTTCAATCCAAATGGAGAAATTTCAAGGATATTCAGA
GTTCGATGGGGCTCGGCAACAGAGTTTTCTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCT
TATGATCATGGTTTAAATCGATTAAATAGAAATCGTTCTATTTTCTTGGAAAATGCGGATTATGACAAAA
AATATAGTTCACTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCCAC
TAAGGATTTGAACCAAAATCACTTTTTGGGGCATATCAGTCTTTTCTATTATCAAATGATATCCGTTTTA
TTTGCAGTGATTGTAGAAATTCCATTTTCCCTAAGATTAGGATCCTCTTTCGAAGGAAAACAATTCAAAA
AATCTTATAATTTACAATCAATTCATTCAATATTTCCCTTTTTAGAAGACAAATTCTCGCATTTTAATTA
TGTGTTAGATGTAGTAATACCTTACCCCATCCATCTAGAAATCTTGGTTCAAATCCTACGTTACCGGGTA
AAAGATGCCTCTTCTTTGCATTTTTTTCGGTTCTGTCTATACGAGTATTGCAATTGTAAGAATTTTTATA
TTAAAAAAAAATCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATACGA
ATCCATCTTTTTTTTTCTACGCAAGCGGTCTTCGCATTTACGATCGATATCTTATAAAGTCCTTTTTGAG
CGAATTTTATTCTATGGAAAAATACAACATTTTTTTAAAGTCTTTGTTAATAACTTTCCGGCAATCCTAG
GGTTGCTCAAGGATCCTTTCATACATTATGTTAGATATCACGGAAGATCCATTCTGGCAACAAAGGATAC
GCCGCTTCTGATGAATAAATGGAAATATTATTTTGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTT
CAATCGCAAAAGGTGAATATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTT
TACGATTAAACCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACGCATTTCTAATACATAATGTTAGAAT
CAAATTGGATAGCATAATTCCAATGTCTTCTATTATTGGATCATTGGCTAAAGATAAATTTTGTAATGTA
TTAGGGCATCCCATTAGTAAAGCGATCTGGACGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGC
GTATATGCAGAAATATTTCTCATTATTACAGCGGATCTTCACAAAAAAAAAATTTGTATCGAATAAAATA
TATACTTCGTCTTTGTTGTGTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTTAAAA
AGGTTAGGTTCGGGTTTATTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTCCCAC
GAAGTTATTATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTAATGA
TTTGGTCAATCATGAATAATTGGGTTCTGAGACCCCATAAATTAAATCGAAATTTATCATAATTTATGCA
GAGATAACCAAAAAATAAATGATTTTCTATTATCAAAAATCATTTATTTCTATTATTAAATGTTCATACA
GTAAGACTAAGATGAAATTTACTGAGTATTGAATTCGGCGTCCTATTTATAAGGAACCAAAGAAATTGAG
TTTTCTATGTATACATAGAGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGGTTTTTT
ACCGTTTTTTCATTTTAACAAGGAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK