The detailed information of tRNA gene sequence


Sequence ID>CHL090800099
Genome IDAY228468
Search identical group
Phylum/ClassViridiplantae
SpeciesPinus koraiensis
Start position on genome 3913
End posion on genome 1340
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttcgcaataT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACGAGCTCCGGGTTCGAGTC
CCGGGCAACCCGGat
Downstream region at tRNA end position 
caaatttctg
Secondary structure (Cloverleaf model)
>CHL090800099	Lys	TTT
                   T      GGat caaatttctg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     GAGCT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2500 (in A-loop)
GTGCGACTAAGATCTTTTACACATTTGAATGAAGTAGAAAACTCGTCGATACCATCGGTAAAGTTCGGAA
GACTACGACTGATCCTAATGAACGGAAAAAAAAGCATGTCGTTCCAACATATGATCTTTATGATACCTGA
TATTATTTCTCGGATACCTGATTGTATTCGATCAGGACCGGATCTGATTCAAGGAATCAAATGGGTGGAA
AATGTCTATTATATACCTGGATGGATGTATAATATGCTCATCCTTTCGGATCAAATGTGATAATTGTGAA
TAGGATTTCATCAATTCGCGGTTAAGTCGAATGAGTCAATGGAGAAAGCTATATGACTTGAATCATAAGT
AGACCCAGAGAAATGAGCTTCTGTTCCTCGTTCCAATTTAACGAGCGAGGAATTCCCTTTACTGATCAGA
AGTTAAGAGCAGTTTAGTACCTGATATCGGGAGGTTTTCCCTGAGTAGATCAGGGATTTATACACTCACA
ATGAGTCCTAAGTACTCGAGTACAGATGTGTAAGATAAATAGTGTACTGACCAGGTTTATTTATTCCATG
AGTCAGGAGAGCGATTGGTTGCCAGGATAAAAAAATTTTGTTCTTCCTCATGACGAATGAGATCCTTGGG
TAGTAAATCTATAGAAGATAGAATCTTTATATTTGGATATATCTCTTTTTTCCTATCTTGTTCCGACTAG
ATCGCACCATGTATTTTCTCAGAAATGAAGAGGTTATTCTCATGAACGAGGGCCATAGCTGAGGTTTGGA
AATGGATGAATTCCATAGATACGGAAAGGAAGATAACTCTCGGCAACAATGCTTTTTATATCCACTCTTT
TTTCAGGAAGATCTTTACGCAATTTCTCATGATCATTATTTGGATGGATCAAGTTCTTCCGAACCGATGG
AACATTTAAGTTCCAATGATCAATTCAGTTTCCTAACTGTAAAACGTTTGATTGGTCAAATACGTCAACA
AAATCATTCAATTGTTTTATTCGTGAATTGCGCTCCAAATCCATTAGCTGATTGCAAGAAGAGTTCCTAT
TCTGAATCGGTACTAGAAGGACTTACATTGGTCCTGGAAGTTCCGTTCTCTATACGGTCAAAATATTCTG
TGGAAGGGATGAATGAATGGAAGAGTTTCCGGTCGATCCATTCAATATTTCCCTTCTTGGAGGATAAATT
CCCGCATTCAAATTATATATCAGATGCACGAATACCCTATTCTATTCATCCGGAAATTTTGGTTCGAACC
TTTCGTCGCTTGATCCGAGATGCTCCCTCCTTGCACCCATTACGCTCTGTTCTCTATGAATATCGAAATA
GTCCAGAGAATTTACAAAGATCAATTATTGTCGTCCCAAGAGTAAATACGAGATTCTTCCTGTTCCTGTG
GAATTATTATGTCTATGAATGCGAATCCATTTTATTTTCCCTTCTTAAACGATCCTCTCATTCACGATCG
TTGTCTCATAGACCTTTCCCTCAGCGAACTCATTTTCATCGAAAGATAAAACATATTATCATATTTTCTC
GTCGAAATTCACTGAAAAGTATCTGGTTGTTGAAGGATCCTAAAATTAACTATGTTAGATATGGTGAAAG
ATCTATTATAGCTATAAAAGGTACTCATCTCCTAGTGAAAAAATGTAGATATTATCTTCTACTTTTTCGG
CAATGTTATTTCCATCTTTGGTCCGAACCGTATAGGGTCTGTTCTCATCAATTATCCAAGAATTGTTCTT
CTTCTCCAGGTTATTTTCTGAGGGTTCGGATGAACCCTCTTTTTGTCAGAACAAAAATGCTAGATGAGTT
ATTCATCGCCGATCTTATTACCAATGAATTTGATCCAATAGTTCCGATTGTACCAATACTTGGATTATTG
GCTAGAGAAAAATTCTGTGACGTATCAGGACGGCCAATTAGTAAATTGTCTTGGACCAATCTAACAGATG
ATGATATCCTCAATCGATTTGATCAAATTTGGAGAAATCTTTTTCATTACTACAGTGGATCCTTTGGTCG
AGATGGTTTATATCGTATAAAGTATATACTTTCATTATCATGTGCTAAAACTTTAGCCTGTAAACATAAA
AGTACGATACGTGTAGTTCGGAAGGAATTAGGTCCAGAACTCTTTCAAAAATCGTTTTCAAAAGAACGAG
AATTTGATTCTCTGCCTTTTTCGTCAAAAGCGGCGGCCCGTTCGCAGAGAGAACGAATTTGGCATTCAGA
TATTCCCCAGATAAATCCCCTAGTTAATTCCTGGCAAAAGATACAGGATCTTAAAATAGAAAACTTATTT
GATCAATGAAATGCTCTTTGAGTAATTGCCTCGATTCAGAATCATTTTTCTTTTTCTATCCGAGAACTAA
AATGATTAGGAAATAGATACATTACATGGGGAAAGCCGTGTGCAATGAGAATTGCAAGCACGGTTTGGGG
AGAGATTTCTCGCTCTTACTGATACTGAAGGAGCAGATCATCCACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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