The detailed information of tRNA gene sequence


Sequence ID>CHL090800106
Genome IDAY522329
Search identical group
Phylum/ClassViridiplantae
SpeciesOryza sativa Indica Group
Start position on genome 50980
End posion on genome 50309
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
atctctgaca
tRNA gene sequence 
AGGGCTATAGCTCAGTTCGGTAGAGCAACTCGTTTACACCGTTTGATCTGTTTTACCGAG
AAGGTCTACGGTTCGAATCCGTATAGCCCTAata
Downstream region at tRNA end position 
tgtccttttt
Secondary structure (Cloverleaf model)
>CHL090800106	Val	TAC
                   a      Aata tgtccttttt
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        A     GATCTGTTTTACCGAGAAGGTC
                    A - T
                    C   T
                    T   T
                    C - G
                    G - C
                  T       C
                  T       A *
                    T A C
intron: position=38, length=581 (in A-loop)
CGTGCGCCAATGCTTTTCAAGGGAGCTTATTATGCAATGAACATAGTGGATCTTCTTGCAAAATCAATGT
CTTACTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGT
ACCAATCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCA
CTAAATGCTAGGCTTAATGAGGATAAGGGCCTCCAAAAAAATTCTTTTCGTTCTATGAACTTTAAGGTGT
ATGAAGTCTCATAGTCAACTCTTGTAGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTA
GGCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCTTTGAAACACTTTGGTATTGCTCTTAGATAGATCAT
AATACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTTTCCGTAAAGAAAAACTATGGTGGAC
TAACTGATCTTTCTATCAGTTGATAAAAGAGCCCAATGCAAAAAAATGCATGTTGGGTCTTTGAAACAGT
TCGAATCATTTCGATAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK