The detailed information of tRNA gene sequence


Sequence ID>CHL090800123
Genome IDAY660566
Search identical group
Phylum/ClassViridiplantae
SpeciesHuperzia lucidula
Start position on genome 70374
End posion on genome 67847
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
aaatgaaaaT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACGAGTTCCGGGTTCGAGTC
CCGGGCGACCCAAaa
Downstream region at tRNA end position 
ttttttcata
Secondary structure (Cloverleaf model)
>CHL090800123	Lys	TTT
                   T      AAaa ttttttcata
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     GAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2454 (in A-loop)
GTGCGACTAGGGAGTTTTACATATTTAGATGAAATAAGAATATCATCCAAACCATTGGCAAGGTTTGTGA
AACTGCGACTAATCCTGAAGGGAAACTTAGCGGAAAAAACAGCATGTCGTTTATATTCCAAATTCTTCAT
CAGGCTTAAATTAATAATATTCTTTCTCATCAGGGAATGAGAAAAAGTACTTAAAAAAGGTACTTTATTA
AATATGGATTTATTAACTAAACAAAAAAAGGAGTTAATGGATAAAGCTATATGGCTTGAATCATAGGTAA
AACCAGAAGAACGAGCTTCTGTTAAAAGAGAATTATTCCAAGAATTCCCTACTAATTGAAAGTTAAAGGT
AAATTAGTAGCCAATATGGGAAAGGTTGGTCCCCACTAAGGGGATTTCCTTACCACAGGGAGTGAATCCT
AAATACTCAGATAAAAATATATGAAAAAGTGACCAGTATGCTGACCAAATAGAGTAATTTATAAGTCAGG
AGAGCAATCGGTTAGAAAAACGAGTTTTTTATTAAAAATAAATAAGTATTTTGACAAAGAATCAAATGAA
TTTTGGATATAGATTATTCGGGAAAATCTCCATTTCCGAATAAATAACAATTTCTTTGGTCTTTGCACAG
ATTGCACTATGTATTATTTCCTACCCTAAGAGGTTACTCTAGTGAGAACCATGGCTTGGGTTTTAGCCAG
GATTGATAAGCTACGAATGAATCAAACAAATATTTTCTGGCAAAAACGCTTTTTGTATTTACTTCTTTTC
CAAGAGGATATTCACGCAATTGCTTGCAATCGTTTTTCAAAAAAAAAGAATTGGGTCCAAAAAAAATTGA
CGATTCAAGTCTCAACAATCATTTTAGTTTCATAACTAGAAAACGTCTAATCAGTAAGATACGTCAACAA
AACCTTTTAGAAACTTTAGCCTTATGGATAAATAAATATTTAAGCGGGGGAGGACATAATAAAAAAAACC
AATCCTTTGATTACTGTATCAATTATTACTTTGAATCAATCCGAGAAGTCCTGACCTCAGTTTTGCAAAT
TGTACAATTACAACCCTTGCTAGAAGAAATTAATGAATTGAATAGTTTTCAATCTATTCATTCCATATTC
CCTTCTATGGAGGACCATTTTTCACATCGTCATCATTTCTCAGATATAAAAATACCTTATTTTATTCATC
CAGAAATTCTTATACGAATTTTTCGTCGACGAATTCAAGATGCTCCTTTTTCACACTTATTACGATTTGT
TTTTTACGAGTATCAAAATATCATTGTATTAGATAAATCCATTCCTCTATCATGGAAAGAAATAAGTAAA
TTATCCACATTTTTATGGAATTATTATGTCCACGAATTTGAATCCACTTTGGTTTCTCTTTGGAAACGAA
CTTTCCATTTCAATTCGTTCCCCTACGGAGCTTTACTCGATCGAACCCAATCTATTCGGAAAGTTAAGCA
TATAGAAAAACTACCACATTTTAAGAAGTCACCACGGATCATTATTTTATCAGGGAATATCCCCCTATGC
GTAAAAAAATACTCCATTCATTATGTGAGATATGAAAATAATCTTATGATAGCTTTAAAAGGTACTAAAT
TTTTGGTCCATAAATGGAAATGTTATATAATAAGATTTTGGCAATATTATTTTCATTGTTGGTTTAAACC
ATGCAGGGTATCTCCAAGAGAATCATCCAAAGAGTGTCTGACTTTTCTGGGTTATATTCTTGGTATCCGG
CCTCAAATTATTGTGGTTCAAGCCAAAATGATAAATAATTTACCTATTACTAGTATTATTAGCAAAGAAT
TATGTGCTATAATTCCGGTTTTCCATTCAATTAAATTATTAGCTAGAGAAAAATTTTGTAACACTTTGGG
ACATCCAATTGGTAAATTAGCTTGGACTACTTCTGAAGATGATGACATTCCTAACCAATTTAATCACATT
TGGAAAAATATTTTCTATTATTATAGTGGGTGCCTAAATAGGAATGGCTTGTATCAAATACAGTATATAC
TCCGATTTTCATGTGCAAAAACTTTGGCTTGTAAACATAAAAGTACGATACGTGTCGTATGGAAAAAATA
TGGTTCAAGAAGACTATTTCCAAGATATTCATCTTACAAAGAACGGGAATCCCCGTTTCTTTCCAGGGTT
TATTCCCATAAAAAAAGATTCTGGTATTTAGATGTTATTCAAGTAGATTTTATAGCAGACTCATTGCAGA
AGGGGAGAATACCCGAATTCAAAACTAATTTTACTAACAAGAAGCTTATTAAGCAATTGCCGGAACAAAC
TCAATATGATTCTGTAATTCTGTAGAAGAACCAAGTATGATGAGAAATAAATACATAGAGAGAGCCGTGT
GCAATGAAAATTGCAAGCACGGTTTGAGAAGAGGTGTTTTTATCTCAGTTAAAGAGTAACTTATCTACTT
TCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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