The detailed information of tRNA gene sequence


Sequence ID>CHL090800132
Genome IDAY928077
Search identical group
Phylum/ClassViridiplantae
SpeciesZea mays cultivar B73
Start position on genome 48954
End posion on genome 49498
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaagtaaaaT
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAAAATCCGTCGACTTTATAAGTCGT
GAGGGTTCAAGTCCCTCTATCCCCAacc
Downstream region at tRNA end position 
ctcttttatt
Secondary structure (Cloverleaf model)
>CHL090800132	Leu	TAA
                   T      Aacc ctcttttatt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTATAAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=458 (in A-loop)
GATTGTATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAATGA
AAAATGGGCAATCCTGAGCCAAATCCCTTTTTTGAAAAACAAGTGGTTCTCAAACTAGAACCCAAAGGAA
AAGGATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATCGAAGTAATAACGATTAATCACAGAACC
CATATTATAATATAGGTTCTTTATTTTATTTTTAGAATGAAATTAGGAATGATTATGAAATAGAAAATTC
ATAATTTTTTTTTAGAATTATTGTGAATCTATTCCAATCAAATATTGAGTAATCAAATCCTTCAATTCAT
TGTTTTCGAGATCTTTTAATTTTTAAAAGTGGATTAATCGGACGAGGATAAAGAGAGAGTCCCATTCTAC
ATGTCAATACTGACAACAATGAAATTTCTAGTAAAAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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