The detailed information of tRNA gene sequence


Sequence ID>CHL090800138
Genome IDAY958085
Search identical group
Phylum/ClassViridiplantae
SpeciesStaurastrum punctulatum
Start position on genome 35589
End posion on genome 33026
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gatttagtaT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTATTCGGCTTTTAACCGACTAGTTCCGGGTTCGATCC
CCGGGCAACCCAAat
Downstream region at tRNA end position 
agattccatt
Secondary structure (Cloverleaf model)
>CHL090800138	Lys	TTT
                   T      AAat agattccatt
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          C T
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    T   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2490 (in A-loop)
GTGCGATTAAAAGGTTCAAAAAGATAAGGTAAGAATAATTATCTATATTGCTGGCGCAGTGTAATAGGCA
TCGGCTAACTTGAAAAGGAAACTTTAAGGGGACTACAGCATGCCGATTAAAGAACAATCAATTAATGACT
AATGGAAAATATTACAAAAACAAAAATCTGTAGGATCCTTTAATTAAGAATTGATTTGTTTTAGCTTATA
AATTAATGGACAGACACAATAGTCTAACCACATAATGTAAATAAAGTGCCGAAATTTTTCTTGAATTTGC
ATTCAAGTTCCTTAAATTTTTTGATATTTTAAAGATCAAATACTAGCCAGTTTAAGGAAATTCTTTATCT
GAAAAGATAATATAGTACAAAAAAGTGGATCCTATTAAACTTAATATAACTTTTTGAATTATTTATATGC
TGACTAAATAGAGTTACAAGTCAGAAGAGCAATTACTAAAGTATAAAAATAGTTTCTAAAGATTTCAGCA
GGATCTTGATTGAATGAATATTATTTTCATCCTACTAAGGTCTTTAGATTTTTTTCTATTTTTCTATTCT
TAGGTGGATTGCATTGTGTGTCTAGAAAACTAGAGGGAGAGTGTGAGAATGAAAGACTCACGAGAAAAAT
TGATCAAAAGATTTTTATGCGCTAAAACTAATACAAAAATAGTTAATCAAGAAAATAAACTTTATTATTT
TTTTTTGCATGAAGATTTGTATCCTATTATTTTTCAAAATACTGACAGTTCTTTTGGAAAATTTTCTTCT
GTATTTAGAAAAACTAATATCAAAAAAAATCATAGGGAAAGTTTCTTAACAATTAAGTCTTGTATTTTTC
TTTTTCGTTCTAATAATTTTTCTGGTAGAAAACGATCTTTTTTTTCTAATACACGATTTCATGATCAAAA
AAAAAAAGAAAATTTTTTGCCCTTACCAAAGAAAGTTATCTTTTCTCTTTTTTTTGAAAGCATTACTTTT
ATTCTTTTATGCAATCAAAAAAAAAGTGACTTTGAAAAACAATTTTTTCAAACAAAAGATCTATCTATAT
CTATTCAGAAACCATTGGCATCTCTCGAACGTCAATGGCAATATGACTCTTTTGGTTTTCAAGGCTGTTT
TTCTTATTTTTTTCATCCTGAAGTAGTATTGCGAATTCTTAGAAAAAAATTTCAAGATATTTCTTTTTTA
CACTTATTAAGGAAATTTTTACACTTAAATGTGTATTTATCTAATAATACGGTGAAAGAGGTACCTACTA
ACAATATAAGAACTATTTTGTGGAATATATATTTTTTAGAAATAGATAGTTTTTTTGTTTCAATTTGTAA
AAATTATTGCATTTCTGATGAAATAAATAATGTTAGTAGTAATTATTCTTTAAGTTGTTTTGAAAAAATT
CAAGAATGGACATATTTTGTAGAAAAACAAGAATATAAAGACTTTTTTGAGAAAAAATTATATCCGTATG
AAATTTTTGATACTATTACAATACGTAATTCAGAAGAACGTAGGTTAGAGCAATCTATAAAAAGACAAAT
TTCTTTTTTAGATCAATCGAAGATTTACAAATATTTTCGTACTAACACAAATTGGTTTATTTTTTTTCAA
AAACAAAAACCTGAGAATATTTTGCTCAAAAGATGGATTATACTTTTTTTCATCCGACGTTTAGGATATA
TATTGCAAGAAAATACAATAAATTGGACCTTAACTTTTTCAGAATATCAAAACGAACTATCTGCTTATTT
TTTTTTAGCTTATATTTTACAGTTTCCTAAAAAAAAGAATTTTGTAAAAATCAATACAAAACTTTTCTTT
TTGGTACATTATTTTGTAAGAAGAGTAATTTCTTTTTTGAATCCCTTGTATTTAATAATTCTCCTATTAT
CAAAACAAAATTTTTGCAATTCTTTTGGTTATCCTAAAAGCAAATCTGGTTGGGTTACGTGGACTGATAC
TGATATCATACAAAACTTTACTCGATTACAAAATAATCTTTTCTTCTTTTATAGTGGATGTACTAATACT
AAAGCTTTAGCGCGTATTCACTATATATTACATTTTTCTTGTGTTAAAACATTAGCTTGTAAACATAAAA
CAAATCTTCGATATATTTACAAAAAATTTGGAACTAATCTTACTAGAAAAGATTTTACAACAAAAATTTT
TGTTACTAATCAATCTAAAAATTTTAGATTAAGATCTTTATGGAAAAATCAAAAAATGACTAGAGTTTGG
AATTTTCGTTTAACACAACTGAATTCCCTTATTTTCCATTTAGAAACTTTTTATAGATTGCGATAAATAG
AAATAAATTTTTTGTTTAATTTTTTGGTAGTTTTGATTTTTTTAGATATTTGATCAAAATCCTTCTTATA
TTTTATTGAGATTCCATAAAGAAAGCCGTGTGCAATGAAAGTTGCAAGCACGGTTTGGGAAGAGGTTGAT
TGAGTTGTAAGGATTTTACACAAAATTAACCGACTTTCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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