The detailed information of tRNA gene sequence


Sequence ID>CHL090800140
Genome IDAY958086
Search identical group
Phylum/ClassViridiplantae
SpeciesZygnema circumcarinatum
Start position on genome 118631
End posion on genome 119240
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aatcaaaaca
tRNA gene sequence 
GGGGGTATGGCGGAATTGGTAGACGCTACGGACTTAAAATCCGTTGATCCTAGGATTGTG
AGGGTTCAACCCCCTCTACCCCCagca
Downstream region at tRNA end position 
ataagaacaa
Secondary structure (Cloverleaf model)
>CHL090800140	Leu	TAA
                   a      agca ataagaacaa
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          C C
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     TGATCCTAGGATTGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=526 (in A-loop)
AATACAACTGAGCCCTACATGGGAAACCTAGGAGGTGACAGCTTTCAAATTCAGGGGAACCTGGGATGAA
CAATAGACAGGCAATCCTGAACCAAATTCTGTTATCACTGACAGAATAGGTGCAGAGACTCAATGAAAGC
TATTCTATCGAACACAATATTATTAGGCAGTACACAAATTCTATTATCTAACAAAGACGAACAAACACTT
AGTTAGTATCCTATATATTATTAGAAGGTACAACCAAATGGTTAGTTTTGTGCAAATGCCTCCAAATTGT
AGTAACATTATGTTTCATATGTTGTGTGGAATTGGTTATATTATAATTAAATAACACAATTTATGCTACA
TAAATAATGTCATTAAATGTTGGTTTAAAATTACACAATGATGCTTAATAACGATGTTTTATCTAATAAT
TACATAAAACATCGTTATTAAGCATCTTGTTATTTGTGACACGAGAATAAAGAGAGAGTCCATCTTACAG
GCTTATAGAAGCCACAATGCAAATTGTCGTAAGACG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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