The detailed information of tRNA gene sequence


Sequence ID>CHL090800141
Genome IDD17510
Search identical group
Phylum/ClassViridiplantae
SpeciesPinus thunbergii
Start position on genome 4079
End posion on genome 1505
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttcgcaataT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACGAGCTCCGGGTTCGAGTC
CCGGGCAACCCGGat
Downstream region at tRNA end position 
caaatttctg
Secondary structure (Cloverleaf model)
>CHL090800141	Lys	TTT
                   T      GGat caaatttctg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     GAGCT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2501 (in A-loop)
GTGCGACTAAGATCTTTTACACATTTGAATGAAGTAGAAAACTCGTCGATACCATCGGTAAAGTTCGGAA
GACTACGACTGATCCTCGAAGTATAATGAACGGAAAAAAAAGCATGTCGTTCCAACATATGATCTTTATG
ATACCTGATATTATTTCTCGGATACCTGATTGTATTCGATCAGGACCGGATCTGATTTAAGGAATCAAAT
GGGTGGGAAATGTCTATTATATACCTAGATGGATGTATAATATGCTCATCCTTTCGGATCAAATGTGATA
ATTGTGAATAGGATTGAATCAATTCGCGGTTAAGTCGAATGAGTCAATGGAGAAAGCTATATGACTTGAA
ATCATAAGTAGACCCAGAGAAACGAGCTTCTGTTCCTCGTTCAATTAAGCGAGCGAGGAATTCCCTTTAC
TGATCAGAAGTTAAGAGCAGTTTAGTACCCAATATCGGGAGGTTTTCCCTGAGTAGATCAGGGATTTATA
CACTAACAATGAGTCCTAAATACTCGAGTACAGATGTGTAAGATAAATAGTGTACTGACCAGGTTTATTA
ATTCCATGAGTCAGGAGAGCGATTGGTTGCCAGGATAAAAGATTTTCGTTCTTCCTCATGACGAATGAGA
TCCTTGGGTAGTAAATCTATAGAAGATAGAATATTGATATCCGGATATATCTCTTTTTTCCTATCTTGTT
CCGACTAGATCGCACCATGTATTTTCTCAGAAATAAAGAGGTTATTCTCATGAACGAGGGCCATAGCTGA
GGGTTGAAAATGGATGAGTTCCATAGATGCGGAAAGGAAGATAGCTTTTGGCAACAATGCTTTTTATATC
CACTCTTTTTTCAGGAAGATCTTTACGCAATTTCTCATGATCATTATTTGGATGTATCAAGTTCCTCCAG
ACCGATGGAACATTTAAGTTCCAATGATCAATTAAGTTTCCTAACTGTAAAACGTTTGATTGGTCAAATA
CGTCAACAAAATCATTCAATTGTTTTATTCGTGAATTGCGATCCAAATCCATTAGCTGATCGCAAGAAGA
GTTTCTATTCTGAATCGGTACTAGAAGCACTTACATTGGTCCTGGAAGTTCCGTTCTCTATATGGTCAAA
ATCTTCTGTGGAAGGGATGAATGAATGTAAGAGTTTCCGGTCGATCCATTCAATATTTCCCTTCTTAGAG
GATAAATTCCCGCATTCAAATTCTATATTAGATGCACGAATACCCTATTCTATTCATCCGGAAATTTTGG
TTCGAACCTTTCGTCGCTGGATCCGAGATGCTCCCTCCTTGCACCCATTACGATCTGTTCTCTATGACTA
TAGAAATAGTCCAGAGAATTTACAAAGATCAATTATTGTCGTCCCAAGAGTAAATACGAGATTCTTCCTG
TTCCTGTTGAATTATTATGTCTGTGAATGCGAATCCATTTTATTTTCCCGTCTTAAACGATCCTCTCATT
CACGATCGTTGTCTCATGGATCTTTCCCTCAGCGAACTCATTTTCATCGAAAGATAAAACATATTATCAT
TTTTTCTCGTCGAAATTCACTGAAAAGTATCTGGTCGTTGAAGGATCCTAAAATTCACTATGTTAGATAT
GGCGAAAGACCTATTATAGCTATAAAGGGTGCTGATCTCCTAGTTAAAAAATGTAGATATTATCTTCTAA
TTTTTCGGCAATTTTATTTCCATCTTTGGTCCGAACCGTATAGGGTCTGTTCTCATCAATTATCCAAGAA
TTGTTCTTCTTCTCCAGGTTATTTTTTGAGGGTTCGGATGAACCCTCTTTTGGTCAGAACCAAAACGCTA
GATGAGTTATTCATCCCCGTTCTTATTACCAATGAAATGGATCCAATAGTTCCGATTGTACCAATAATTG
GATTATTGGCTACAGAAAAATTCTGTGACATATCAGGGCGGCCAATTAGTAAATTGTCTTGGACCAGTCT
AACAGATGATGATATCCTCGATCGATTCGATCAAATTTGGAGAAATCTTTTTCATTACTACAGTGGATCC
TTTGATCGAGATGGTTTATATCGTATAAAGTATATACTTTTATTATCATGTGCTAAAACTTTAGCCTGTA
AACATAAAAGTACGATACGTGTAGTTCGGAAGGAATTAGGTCCAGAACTCTTTAAAAAATCGTTTTCAAA
AGAACGAGAATTTGATTCTCTGCCTTTTTCATCAAAAGCGGCGGCCCGTTCGCAGAGAGAACGAATTTGG
CATTCAGATATTCCCCAGATAAATCCCCTAGCTAATTCCTGGCAAAAGATACAGGATCTGAAAATAGAAA
ACTTATTTGACCAATGAAATGCTCTTTGAGTAATTGCCTCGATTCAGAATCATTTTTATTTTTCTATCCG
AGAACTAATAGGAAATAGATACATTACATGGGGAAAGCCGTGTGCAATGAGAATTGCAAGCACGGTTTGG
GGAGAGATTTCTCGCTCTTACTGATACTGAAGAGCAGATCATCCACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK