The detailed information of tRNA gene sequence


Sequence ID>CHL090800144
Genome IDDQ226511
Search identical group
Phylum/ClassViridiplantae
SpeciesMorus indica
Start position on genome 4315
End posion on genome 1690
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
attttagttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCAtta
Downstream region at tRNA end position 
tcccattata
Secondary structure (Cloverleaf model)
>CHL090800144	Lys	TTT
                   c      Atta tcccattata
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2554 (in A-loop)
GTGCGGCTAGCATCTTTTACACATTTGTATGAAGCAACGGATTCGTCTATACCATCGGTAGAGTTTGTAA
GACCGCGACTGATCCTGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATAGAGAATTCTAAAAAT
ATTTCATTCTTACCGTATAGGTCCAAAACCTTGTGTAAATTGTTTGAATTCTTGGCGCAGAACAAAATCC
ATTTAAAAAGCAAAGAAATAAAAACTAAATTTAAAGTTGTGTCGAGTAAATAAATGGATAGAGCCTTACT
ATACGATAGGTTCCAATTATAGGGAAACAAAAAGTAACGAGCTCCTGTTCTTAATTTTTGAATAATTACC
CGATCTAATTAAACGTTAAAAATAGATTAGTGCTTGACGCGGGAAAGGCTTTTCCCATGAGTGTATTATC
AATCAATGTTTTATGAATCCTAACTATTAGCTATCTCCATTTCCATTATGTGGTGGAGATAAATGTGTAG
AAGAAGGCAGTATATTGATAAAGAGATTTTTTTTTTCAAAATCAAAAGAGCGATTGGATTGCAAAAATAA
AGGATTTCTAAACATTTTTTTATCCTAGAATGAACCTAAACCAATTAGGTGCAAAAAGAGAGGATAGAGA
GTCCGTTGATGAGTCTTACCTTTTTCGAGGTATCGATCTTTTTTCTTAATATCATACCTTGTTTTAACTG
TATCGTACTATGTATCATTTGATAACCCAATAAAGCCCATCCTATTTTCGGTTCAAATCTAATCTTAAAT
GGCGGAATTTCAAGGATATTTAGAACTAGATAGATCTTGGAAACATGACCTCCTATACCCACTTATCTTT
CGGGAGTATATTTATGTATTTGCTCATGATCTTGGTTTAAATAGATCGAATTTGTTGGAAAATGTAGGTT
ATGACAATAAATCTAGTTTACTAATTGTAAAACGTTTAATTTCTCGAATGTATCAACAGAATCATTTTAT
TATTTCCGCTAACGATTCGAACCAAAATCAACTTTTTGGGTACAATAAGAATTTGTATTCTCAAATGATA
TCAGAGGGATTTGCAGTCATTGTGGAAATTCCATTTTCCCTACGATTAGTATCTTCCTTAAAGGGGACAG
AAATCGTAAAATATTATAATTTACGATCAATTCATTCAATATTTCCTTTTTTAGAGGACAAATTCTCACA
GTTAAATTATGTATCAGATGTATTAATACCCTACCCGATTCATCTGGAAATCTTAGTTCAAACCCTTCGC
TACTGGGTAAAAGATGCCTCCTCTTTGCATTTATTACGGTTTTTTCTTCACGACTATTATAATTGGAATA
CTCTTATTATTCCAAATAAATATATTTCTATTTTTTCAAAAAGTAATCCAAGATTATTCTTGTTCCTATA
TAATTCTCATGTTTGCGAATACGAATCTATCTTACTCTTTCTACGTAACCAATCTTCTCATTTACGATTA
ACATCTTCTGGGGGTTTTTTTGAGCGAATATATTTCTATGGAAAAATAAAACATCCCGTAGAAGAAGTCT
TTGCTAATGATTCTCCGACTAGCTTATGGTTCCTCGAGGATCTCTTCATGCATTATGTTAGATATCAAGG
AAAATCAATTCTGGCTTCAAAGGATACGCCTCTTTTCATGAATAAATGGAAATATTACCTTGTCCTTTTA
TGGCAATGTCATTTTTATGTGTGGTCTCAACCAGGAAGGATGTATATAAACCAATTATGCAAACATTCCT
TCAGCTTTTTGGGCTATCTTTCAAGTATGCAAATAAATCTTTCAGTAGTACGGAGTCAAATGCTAGAAAA
TTCGTTTCTAATGGATAATGCTATGAAGAAGATTGATACATTAGTTCCAATTAGTCTTCTGATTGGATCG
TTGGATAAAATGAAATTTTGTAACGTATTAGGACATCCCGTTAGTAAGTCGACCTGGGCCGATTCGTCGG
ATTTTGATATTATCGACCGATTTGTGTGTATATGCAGAAATCTTTTTCATTATTACAGTGGATCCTCAAA
AAAAAAGAGTTTGTATCGAATAAAATATATACTTCGACTTTCTTGTGTTAAAACTTTGGCTCGTAAACAC
AAAAGTACTGTACGCACTTTTTTGAAAAAATTAGGTTCGAATTTATTGGAAGAATTCTTTACGGAGGAAG
AAGAGGTTCTTTCTTTGATTTTTCCAAGAACTTATTCCGCTTTGCGGAGGTCATATAAAGGTCGAATTTG
GTATTTGGATATTTTTTGCATCAACGATCTTGTCAATCATAAATGATTGGTTATACAACTATGGAAATGT
AAATTATCCTTAAATGATAAAAAAAAAGATAACAAAAAATTTCATTTTTTTTTTCTATTATGAAATGTTT
ATGCAGTAAGGGTTGATCAACTGAGTATTCAAAGTCCTATCTAGGGAAGGAACTGAATTTTTTTTAGATG
TATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTACCTATTTTT
TTTTATTTTCTAACAAGTAAATTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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