The detailed information of tRNA gene sequence


Sequence ID>CHL090800146
Genome IDDQ229107
Search identical group
Phylum/ClassViridiplantae
SpeciesChara vulgaris
Start position on genome 61614
End posion on genome 64681
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position
aatttagaga
tRNA gene sequence
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCttac
Downstream region at tRNA end position
attacttgaa
Secondary structure (Cloverleaf model)
>CHL090800146	Lys	TTT
                   a      ttac attacttgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2996 (in A-loop)
GTGCGATTATGGGGTTCAATACATAATATGTAATAAAATTCTTTAACATAGCTGAAATTTTGTTAAAAAA
AACGGCTTACTTGGATGTATGAAAAATATCACAAGGACTATAGCATGCCGGTAAGTAATTCATCAATATT
AATTCATAAAAATTACAAGTTAAAAGGTGTATGGATAAATAAAAACAATCGATTACTGAAATTACAGGTC
AAGTAAATATGCCAGACTTTACTCAGAAATCAAGAAGATAGGAAAATGGAGAATATCGAATAATTATGAA
TATTCTTTTATTGAATATAAATAGACTAGAGTCATAATTTATATTCCTAGAACATTCTGAGTTATCTTAA
ATTTACTGGTAGGCTAAGAGCTAGTGAATAATCAGTTTAAGTAAACTTCATTCCGTTTGGAATATATAAA
CCAAAAGTCAATCCTAATCACCCATTAGATATGTTCTAAAGTTCTCCATATATTGACTACAGAAATTTAA
TGTTTTATAAGTCATAAGAGTGATCAAAAAAGATCATACCATGTATAATTCATAACATACAATATAATAT
AACAATATATACAATATAATAGAATATAACAATATATACATTGTAACATATTATATATTCATATTATAAT
ATTATATATATTATAATATTATATATATTATATATTCATATACTATATTCCTATATAATATATTCCTATT
ATATAATATATTCCTATATATTGTTAACAATATTAACAATATATTAAACACTATAATAGATATATAACAA
TATAATATATCTATAATATATATATTATAGATATATAATATATTATAGATATATATATATTATAGATAAT
ATACAAAGAATATAATAAATATACAAAGAATATAATAAATACTTTCTATAAATAGAAAAGACTTCTCAGC
AATAAACTTATTCCTATTTTTGTTCAATGAATTTAATTTCAAAAAAGAATGAGCTTAAACAAGGATTCTA
TCCTTTATTTTTCTTGGAGGAATTTTATACTAGAGTTTTGATTCACATGAATCATAACCATATACTGAAA
ATAGGAAATATAAAGGAATCGAAATTGATTCATGTGAATAGAATATGTCATTATTTACTTATTAAGAGAT
TGATTCGTCAGATACGTAAACAAAGTCATAAGTACAATGGTATCTCTGAATTTCCTAATTATGAAACAGA
ATTTTATTTTCAATATAAAAATCGATTTTATAATTTAATTATAGAAAATGCTTTTCTTCTTATATTGCAA
ATGATATGGCAACATCAAAAGACAAGGAAAAACGATCCCTCTATTTTAATACACCGATCTATACAATCGG
CTTTTCCATTTTTAGAAAAGAAAATTATTCATTGTATTTGGATTATACATGGAAAAATACAACTTTTTCA
TACAATTGAACAATTCAATTTTTTGTTTTTATTACTTTATGAAAGAATCCGTGATAAAAGCTTTCTTCAT
TTACTAAAAAACATATTGAATTTAAACAAAGAATTTTTGATTGAAAAATTCTATTGTGAAAAATTCCATT
TGATTGAATTGTCAATGTTTTTCAGGAATTTATATATAAATGAATTTGACTCTTTTATCGTTTATCATAT
CGTTAAAACATGGAAATTAGCCTATTTGTTGAATCCAATTAAAGCTATAGATGATTTTTCTTTCATACAA
AAAAATGATATTTTGCTTAATATAAAAAGAAAACAGAAACGTCTTCCTTTGGTGTGTTGGTTGGCTAACA
AATCTTTCTATTCTCTGTATGGAAATATACACTATGTACGTCGTGACCTTTCCTTTTTGATGGCTATTCA
AGCAGGAAAACATATTTCTCGCTTTTGGAAGTATAATTGTATAAAATTTCTCCAACTGAAGTTAGGATTT
CCTTGTTCTTTAGATGTTTTATACTTAAAATCTCTTTTCAATCAAGATTTTTTGTTTTTAGGTTATAGAA
TTGTCAATAAATTGTGGAAAAAAAACTTCAAGATAAGAGCGGTTTCTTGGTATTCGCCTATTCTATTTTT
TTTGAAAGGCCGAAGGATTTCAACAAAAATGCCAGTATTTAATCTAATTGATAGGTTAAGTGTTATGCAC
TTATGTAATCTTGAAGGCTATCCAATTCATAAGGCTGCATGGTCTGTATTTAATGACAAACAAATTATGA
ACATCTTTTCTAACTTATTGAGAAACATACTTTTTTATTATAGTGGATGTTCAAATCGTTCTGATTTAGG
CAAAATTCAATATATTCTCGAATTTTCATGTATGAAAACATTAGCATTTAAACATAAATCTAGTATTAGA
TCTACATGGACGCAATATAAAAAACATGTTTCATTTTTAAGTTTAGTCAAAAATAGACATAAGAATGGTA
AGACTTCAGTTGATCTTTACTTTCTATTTCAAAAAACAAATAAATTCTGGTTATTAGATTTATCTAAGAT
TCAAGATTCTCTTGCTTGTTTTATTTTGATGGATTAAAGAAATTCAAAGATAGAATATCAGAAAGATAGC
ATAGCATATGAATTTTGATAGAATAACAATATAATTGAATCTCAATGAGAATAAAAAATGAAATGAAAAT
TGTTTTTTTTGTATATTTATGTATAAATATACAAAAAAAACAATTCAAGATTTATTATTCTATTTCATCG
GAATGAATAAAATAGAACTATACATGAGGAAAGCCGCTTGCAGTGAAAATTGCATGTGCGGTTTGGGAAG
AGGTTTATTATTGTATTTATAAATACAAGAAAATAAAGAAAAGATCTACTATGAATTTTTGATACATATA
TTGATAAATATATAAATAAATATATATATAAAAATAAATATATATTTATATATATATTTATTTTTATTTA
TATATTTATTTATTAATAATAAGTTGTAATATATCAAAATCAAAATAAACAAAATTAGATCAAGTGAAAA
ATACGATACAAATAATATATAGATACATATATAAATACTATATTACCTACTTTCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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