The detailed information of tRNA gene sequence


Sequence ID>CHL090800149
Genome IDDQ229107
Search identical group
Phylum/ClassViridiplantae
SpeciesChara vulgaris
Start position on genome 180495
End posion on genome 179481
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tttggatgat
tRNA gene sequence 
GGGGGTATAGCTCAGCTGGTAGAGCGCCGCTTTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTACCTCCACtg
Downstream region at tRNA end position 
ggtactaaac
Secondary structure (Cloverleaf model)
>CHL090800149	Ala	TGC
                   t      ACtg ggtactaaac
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     T C G C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  T       T
                  T       A
                    T*G C
intron: position=35, length=941 (in A-loop)
AGTGTGTCGAGAATGTCTAGATTTTGAGGATGCTCAGTAATGAGTGACAATGATAGCTTGTTGTCTAAAT
TAGCGTCTTACCTCAAAGTAGAACGATTGAGGGGAAACGAAACATGACGCTTGTAACTTTGTTCAAAAAA
ACACATTTTTCAGACAAGGAAATTAGTATGGTTTTTGACACGGTGCATTAATATATCTAAATTCTATTTT
TATATTAATAAGAATATATCTATATCAAGAAGAAAGATCTATCTATTCTTTCATTTCATGCAAATGAGAC
TTGGCGGGTCTCTTGGAGACAATCGAAATCACATCAATCGTAGAGATTGATGTGATTTCGATTGTCTCCT
TGTCAGAGGACAATACCGTACCTTGCAAATAGTATTGTAGCTATCTCTTGAGAGAAGAAAGATCAGCATG
AAATTTTGATAAACACTGTAGTTCCATAAATACCTCATCTAGGTAATCTCGAGATTGCCTTATTTATTAT
TCTCTATTCTAGATTCTTCTTTTGATAGTTCTATTTATTATTATGAACTAGTAATTGAATTTGCAATGAG
GAATTCAATAAAATTGATTTGTTGATTGATTTGTTGATAAAGAAAAGCAAAAAGGTTACAGAACCACCAT
AGTAAATTCAATAAACTATTTTGAATTCACAAAACAAAAAATAAGTTAAGAAAGGGTGGTAGTAGGGAAA
TCAATATTTAGGAATTGGCGAAAATTCACTAAAGAGAGCTTGAATTTCAAGAGAAGGATTCAGATTCTTT
GAATTTGAAAAGGAATCTTAATAATAGATTAGGACATTCCAATCTTGAATTCCCTATGGAGAGCGTAGTA
CGATGAAAGTTGTATGCTACGTTCGGGGGGAAGTAATTGCCAATCTGCTAATTCCTAGGTAAAATCGAAG
AGAGGAATTACTGAGGTAGTTGCTTACCCCG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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