The detailed information of tRNA gene sequence


Sequence ID>CHL090800150
Genome IDDQ231562
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum tuberosum
Start position on genome 4409
End posion on genome 1825
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800150	Lys	TTT
                   c      ACta tcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2512 (in A-loop)
GTGCGGCTAGTGTCTTTTACACATATGGATGAAGTGAGGGATTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCGCGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAAAA
TATTTCATTGTTCCTAGATGGGTATAAAACTGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAAGGCTGCGGCTTCAATTAAATTATAGGGAAAGAAAAAGCAACGAGCTTTTGT
TCTTAATTTGAATGATTCCCGATCTAATTATACGTTAAAAATTTATTAACGCCTGATGCGGGAAGGGTTC
CTTGTACCATGAGTGGGTTCTCGATTTTATTGATGAATCCTAACTATTACCATTTTCGATTATGGAGATG
TGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTTGAAAAA
ATAAAGGATTTCTAAACATCTTATTATCCTATAACACTATAACATAGACCAATTAAATGAAACGAAAAAA
AAAAGAGATGATAGAGAATCCGTTGAGAAGTCTACCTGTATCCAAGGTATCTATTCTTACTACAATACTT
TGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCATCTTTGGTTCAAATCGAA
TTTCAAATGGAAGAAATCCACAGATATTTACAGCCAGATAGCTCGCAACAACACAACTTCCTATATCCAC
TTATCTTTCAGGAGTATATTTATGCACTTGCTCAGGATCATGGTTTAAATAGAAATAGGTCGATTTTGTT
GGAAAATTCAGGTTATAACAATAAATTGAGTTTCCTAATTGTGAAACGGTTAATTACTCGAATGTATCAA
CAGAATCATTTTATTATTTCGACTAATGATTCTAACAAAAATCCGTTTTTGGGGTGCAACAAGAGTTTGT
ATTCTCAAATGATATCAGAGGGGTTTGCATGTATTGTGGAAATTCCGTTTTCTATACGATTAATATCTTC
TTTATCTTCTTTCGAAGGCAAAAAGATTTTCAAATCTCATAATTTACGATCAATTCATTCAACATTTCCT
TTTTTAGAGGACAATTTTGCACATCTAAATTATGTATTAGATATACTAATACCCTACCCCGTTCATCTGG
AAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATTCTTTCT
CCACGAATATTGTAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAAAAAAAT
CAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGCGAATCCACTTTCGTCTTTCTACGGA
ACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGGAAAAAT
AGAACGTCTTGTAGAAGTCTTTGCTAAGGATTTTCAGGTTACCCTATGGTTATTCAAGGATCCTTTCATG
CATTATGTTAGGTATGAAGGAAAATCAATTCTGGCTTCAAAAGGGACGTTTCCTTTGATGAATAAATGGA
AATTTTACCTTGTCAATTTTTGGCAATGTCATTTTTCTATGTACTTTCACACAGGAAGGATCCATATAAA
CCAATTATCCAACCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATCATTCAATGGTA
CGTAGTCAAATGTTAGAAAATTCATTTCTAATCAATAATCCAATTAAGAAGTTCGAGACCCTTGTTCCAA
TTATTCCTTTGATTGGATCATTAGCTAAAGCACACTTTTGTACCGTATTAGGGCATCCCATTAGTAAACC
AGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAGAAATCTTTTTCAT
TATTATAGCGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGCTA
GAACTTTAGCTCGGAAACACAAAAGTACTGTACGCACTTTTTTGAAAAGATCGGGCTCGGAATTATTGGA
AGAATTCTTAACGTCGGAAGAACAAGTTCTTTCTTTGACCTTCCCACGAGCTTCGTCTAGTTTGTGGGGA
GTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTATCAATGATTCA
TTCTTAGATTTTCTAAATGACGAATAAATGACGAAGAGATCAAAAATTTTCACTATTCTGAAATGCTGAT
TGTAATACTAATAAGGGGTAAATCAACTGAGTATTCAACTTTTTTAAGTCTTTCTAATTTCTATAAGAAA
GGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAGTGCAAGCACGGCTTGGGGAGGGATCTTT
ACTTGTTTATTTAATTTAAGATTAACATTTATTTTATTTAACAAGGAACTTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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