The detailed information of tRNA gene sequence


Sequence ID>CHL090800164
Genome IDDQ347959
Search identical group
Phylum/ClassViridiplantae
SpeciesLycopersicon esculentum cultivar LA3023
Start position on genome 4398
End posion on genome 1812
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
tattttcttc
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAATC
CCGGGCAACCCACta
Downstream region at tRNA end position 
tcatatcgaa
Secondary structure (Cloverleaf model)
>CHL090800164	Lys	TTT
                   c      ACta tcatatcgaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T A
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2514 (in A-loop)
GTGCGGCTAGTGTCTTTTACACATATGGATGAGGTGAGGGATTCGTCCATACTCTCGGTAAAGTTTGGAA
GACCGCGACTGATCCTGAAAGGGAATGAATGGTAAAAATAGCATGTCGTATCAACGGAAAGTTCTGAAAA
TATTTAATTGTTCCTAGATGGGTATAAAACTGTGTTAGAATTCTTGGAACGGAACAAAATAAAGTTGGGT
CGAATGAATAAATGGATAAGGCTGCGGCTTCAATTAAATTATAGGGAAAGAAAAAGCAACGAGCTTTTGT
TCTTAATTTGAATGATTCCCGATCTAATTAGACGTTAAAAATTTATTAGTGCCTGGTGCGGGAAGGGTTT
CTTGTCCCATGAGTGTGTTCTCAATTTTTTTAATGAATCCTAACTATTACCATTTTCGATTATGGAGATG
TGTGTAGAAGAAACAGTATATTGATAAAGAAAGTTTTTTCCGAAGTCAAAAGAGCGATTAGGTTGAAAAA
ATAAAGGATTTCTAAACATCTTATTATCCTATAACACTATAACATAGACCAATTAAATGAAACGAAAAAA
AAAAAAGAGATGATAGAGAATCCGTTGAGAAGTTTACCTGTATTCAAGGTATCTATTCTTACTACAATAC
TTTGTTTTAACTGTATCGCACTATGTATCATTTGATAACCCTCAAAATCTTCCATCTTTTGTTCAAATCG
AATTTCAAATGGAAGAAATCCACAGATATTTACAGCCGGATAGCTCGCAACAACACAACTTCCTATATCC
ACTTATCTTTCAGGAGTATATTTATGCACTTGCTCAGGATCATGGTTTAAATAGAAATAGGTCGATTTTG
TTGGAAAATTCAGGTTATAACAATAAATTTAGTTTCCTAATTGTGAAACGGTTAATTACTCGAATGGATC
AACAGAATCATTTGATTATTTCTACTAATGATTCTAACAAAAATCCGTTTTTGGGGTGCAACAAGAGTTT
GTATTCTCAAATGATATCAGAGGGATTTGCATGTATTGTAGAAATTCCGTTTTCTATACGATTAATATCT
TCTTTATCTTCTTTCGAAGGCAAAAAGATTTTCAAATCTCATAATTTACGATCAATTCATTCAACATTTC
CTTTTTTAGAGGACAATTTTTCACATCTAAATTATGTATTAGATATACTAATACCCTACCCCGTTCATCT
GGAAATCTTGGTTCAAACTCTTCGCTATTGGGTAAAAGATGCCTCTTCTTTACATTTATTACGATTCTTT
CTCCACGAATATTGTAATTTGAATAGTCTTATTACTTCAAAGAAGCCCGGTTACTCCTTTTCAAAAAAAA
ATCAAAGATTCTTCTTCTTCTTATATAATTCTTATGTATATGAATGCGAATCCACTTTCGTCTTTCTACG
GAACCAATCTTCTCATTTACGATCAACATCTTTTGGAGCCCTTCTTGAACGAATATATTTCTATGGAAAA
ATAGAACGTCTTGTAGAAGCCTTTGCTAAGGATTTTCAGGTTACCCTATGGTTATTCAAGGATCCTGTCA
TGCATTATGTTAGGTATGAAGGAAAATCAATTCTGGCTTCAAAAGGGACGTTTCCTTGGATGAATAAATG
GAAATTTTACCTTGTCAATTTTTGGCAATGTCATTTTTCTATGTACTTTAACACAGGAAGGATCCATATA
AACCAATTATCCAACCATTCCCGTGACTTTATGGGCTATCTTTCAAGTGTGCGACTAAATCATTCAATGG
TACGTAGTCAAATGTTAGAAAATTCATTTCTAATCAATAATCCAATTAAGAAGTTCGATACCCTTGTTCC
AATTATTCCTTTGATTGGATCATTAGCTAAAGCACACTTTTGTACCGGATTAGGGCATCCCATTAGTAAA
CCAGTTTGGTCCGATTTATCAGATTCTGATATTATTGACCGATTTGGGCGTATATGCAGAAATCTTTTTC
ATTATTATAGTGGATCTTCCAAAAAAAAGACTTTATATCGAATAAAGTATATACTTCGACTTTCTTGTGC
TAGAACTTTAGCTCGGAAACACAAAAGTACTGTACGCACTTTTTTGAAAAGATCGGGCTCGGAATTATTG
GAAGAATTCTTAACGTCGGAAGAAGAAGTTCTTTCGTTGACCTTCCCACGAGCTTCGTCTAGTTTGTGGG
GAGTATATAGAAGTCGGATTTGGTATTTGGATATTTTTTGTATCAATGATCTGGCGAATTCTCAATGATT
CATTCTTAGATTGTCTAAATGACGAATAAATGACGAAGAGATCAAAAATTTTAACTATTCTGAAATGTTG
ATTGTAATACTAATAAGGGGTAAATCAACTGAGTATTCAACTTTTTTAAGTCTTTCTAATTTCTATACGA
AAGGAACTGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAGTGCAAGCACGGCTTGGGGAGGGATCT
TTACTTGTTTATTTAATTTAAGATTAACATTTATTTTATTTAACAAGGAACTTATCTACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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