The detailed information of tRNA gene sequence


Sequence ID>CHL090800166
Genome IDDQ347959
Search identical group
Phylum/ClassViridiplantae
SpeciesLycopersicon esculentum cultivar LA3023
Start position on genome 48363
End posion on genome 48944
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaaaagaaag
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTAAAATCCGTCGACTTTAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCaaaa
Downstream region at tRNA end position 
gactatttaa
Secondary structure (Cloverleaf model)
>CHL090800166	Leu	TAA
                   g      aaaa gactatttaa
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=497 (in A-loop)
AATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAATTA
ACAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCTGAAAACAAACCAAGGTTCAGAAAAAAAGGATAG
GTGCAGAGACTCAATGGAAGCTATTCTAACAAATGGAGTTAAATGCGTTCGTAGAGGACTCTTTACATCG
AAACTTCAGAAAGAAAAAGAATGAAGTGAAGGATAAACGTATATACATACGTATTGAATACTATATCAAA
TGATTAATGACGACCCGAATCCGTAGTTTTTCTATAAAAAATCGAAGAATTGGTGTGAATCCATTCTACA
TTGAAGAAAGAATCGAATATTCATTGATCAAATCATTCACTCCATAGTCTGATAGATCTTTTGAAGAACT
GATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATACCGGCAACAATGAAATTTATAG
TAAAAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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