The detailed information of tRNA gene sequence


Sequence ID>CHL090800192
Genome IDDQ386163
Search identical group
Phylum/ClassViridiplantae
SpeciesSolanum tuberosum cultivar Desiree
Start position on genome 53339
End posion on genome 52696
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
acaagcacta
tRNA gene sequence 
AGGGCTATAGCTCAGTTGGTAGAGCAACTCGTTTACAATAAGTTTGATCTGTTTTACCGA
GAAGGTCTACGGTTCGAGTCCGTATAGCCCTAtaa
Downstream region at tRNA end position 
aaatgaaaaa
Secondary structure (Cloverleaf model)
>CHL090800192	Val	TAC
                   a      Ataa aaatgaaaaa
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TTGATCTGTTTTACCGAGAAGGTC
                    A - T
                    C - G
                    T - A
                    C   A
                    G + T
                  T       A
                  T       A
                    T A C *
intron: position=37, length=552 (in A-loop)
ACGCGCGCCAATGTTTTTCAAGGGAGTTCATCATACAATCAGAAAAATTGATCTTGTTGAGAAATCGATG
TCTTACTCCATAACTTTGAGGGAACCATAGCCTGACAAAGGTTCGGTCCAATTTGGACACCCATTTAGGA
GGTGCCAAACAGACCCCATCATTGATTTGAGATCTTGATAAGGTGAATACCCAGTCTATTCAATGCTAGG
CATAATGAGTATAAGGACCTCAAAAAAATCTCTTTTCGTCATATGAACTTTAAGGTGTATGAAGTTTCAT
ATTTGATTTTTAAGCAGAACGATAGAGACTTCATTTAACTTAGGTTGATCTAGGCCAGAGACAGACCTAC
GTCAAGATAATCCCACCTTTGAAACACTTTGGTAATGCTCCCAAATAATGAATCAGAGCACATGGAGCCA
TTTCCTTATCTTTTTTTCTGTCAAGAAAAAAAATGGCAGACTAACTGATATTTAGATCAGTTAATGAAGG
AGCCCAATGCAAAAAAAAAATGCATGTTGGGTCTTTGAAACAGTTCAGATCATTTTAATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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