The detailed information of tRNA gene sequence


Sequence ID>CHL090800216
Genome IDDQ864733
Search identical group
Phylum/ClassViridiplantae
SpeciesCitrus sinensis
Start position on genome 4444
End posion on genome 1843
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
cgaattattT
tRNA gene sequence 
GGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATtc
Downstream region at tRNA end position 
ttattattat
Secondary structure (Cloverleaf model)
>CHL090800216	Lys	TTT
                   T      ATtc ttattattat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      C     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2528 (in A-loop)
GTACGGCTAGCATCTTTTACACATTTCTATGAAGCAAAGAATTCGTCCAAATCTTCGGGAGAGTTTGTAA
GACTGCGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTATCAATGGATAATTTTGAGAAT
ATTTTATTCTTGTTCAATCGCTATAAAACCAAGTTTGAATTCTTGGCGCGGAACAAAATAAATATAATTA
TTAAGAGTTGGGTCGAGTTAATAAATGGATAGAGCCCTAGGGTTCCAATTATAGGGAAACAAAAAGTAAC
GAGCTTCGGTTCTTAATTTGAATGATTATCCGATCTAATTAAACGTTAAAAAGATATTAGTTCCTAACGC
GGGGAAAGGTTTTCCCATGAGGGGATTATCGATTTATTTAATGAGTCCTAAGTATTAGCGGGTCCCTATT
ATGGGTTGTAACTGAATGTGTAGAAGAAGCAGTATATTGATAAATATAGTTGTTTTTTTTCCAAAATCAA
AAGAGCGATTGGAGTGAAAAAATAAAGGGTTTCTAACCACTTAGTTATACTATAACTATAACAAACATAA
ACCAATTAAATTAACTCAAAATGAGAGGATAGAGAATCCGGTGATGAGTCTACCCATTTTCAAGGTATCC
ACTTTTTTACTACAATACTTTGTTTTCACCGTATCGCACTATGTATCGTTTGATCGCTCACTAAATCCCT
TACCTTTGTTTTTAATCGAATTTCAAATGGAGGAATTTCAAGTATATTTAGAACTAGATAGATCTCAACA
ACACGACTTCCTATACCCACTTCTTTTTCGGGAGTATATTTATGTACTTGCTCATGATCATGGTTTAAAT
AGCTCGATGATGTCATTGGAAGGTGGGTTTTATGACAATAAATCTAGTTCACTAAGTGTGAAACGGTTAA
TTACTAGAATGTATCAACGGATTAATTTGAGTATTGCTGCTAATGATTCGAATCAAAATCCGATTTTTGG
GCACAACAATAAGTTATATTCTCAAATTATATCAGAGGTATTTGCTGCTGTGGTGGAAATTCCATTTTCC
CTACGGTTGGTGGCTTTTTTAGAAGGGAAAGAAATTGAAAAATCGCCTAATTTCCAATCAATTCATTCAA
TATTTCCTTTTTTCGAGGATAAATTGTCCCATTTAAATTATGTGTTAGATGTACGAATACCCTACCCCAT
TTGTCCCGAAATCTTGGTTCAAACCCTTCGCGAATGGGTAAAGGATGCCTCTTCTTTACATTTATTACGG
TTCTTTCTCCACGAGTATTTTAATTCGAACAGTCTTATTACTCCAAAGAACTCTATTTCTGTTTTTTTAA
AAAGTAATCCAAGATTGTTATTGTTTCTATATAATTCTCATGTATATGAATATGAATCCATCCTCTTTTT
TCTCTGTAACCAATCGTCTCATTTACAATCAACATCCTTTCAAGTCCTCGTTGAGCGAACGTATTTCTAT
GGAAAAGTCGAACATCTTGTCGAAGTCTTTGCTAAAGATTTTCAGGACATCTTAGGGTTGGTCAAGGATC
CTTTCATGCATTATGTTAGATATCAAGGAAAATCCATTTTGGCTTCAAAGGATACGCCTCTTCTGATGAA
TAAATGGAAATATTACCTTGTCGGTTTATGGCAATGGCATTTTCACGCGTCTTCTCAACCAGGAAGGGTT
CAGCTAAACCACTTATACTTAGGCAAGTACGCTATTAACTTTCTGGGCTATCTTTCCGGTGTGCGACTAA
ATTCTTTGTTGGTACGGAGTCAAATGCTAGAAAATTCATTTCTAATAGATAATTCTATGAAGAAGGTCGA
TACGACCGTTCCAATTATTCATCTGATTGGATCATTGACTAAGGCGCGGTTTTGTAACGCATTAGGGCAT
CCTATCAGTAAGTCGACTTGGTCCGATTTCTCTGATTCTCATCTTATCGACCGATTTGTGCGTATATGTA
GAAATCTTTCTCATTATTACAGCGGATCTTCAAAAAAAAAAAGTTTGTATCGAGTAAAATATATACTTCG
GCTTTCTTGTGTTAAAAGTTTGGTTCGTAAACATAAAAGTACTGTACGCGCTTTTTTAAAAAGATTAGGT
TCGGAATTATTGGAAGAATTCCTTATGGAGGAAGAACACGTTCTTGCTTTACTCTTTCCAAGAGCTTCGT
CTACTTCGCGTAGGTTCTATTTATATAGAGGACGGATTTGGTATTTGGATATTTTTTGTATCAACGATCT
GGTTAATTATCAATGATTGGTTACGAGACTATGTCATTTTGAAATGATTCCTAAACAATCAATCGATAAC
AAAAAAATTCATTCATTTGTATTAAATGTTCATACAATAAGAATAATAAAATAAAGGTTGATTAATTGAG
TTATTCAACTTTTTTAATGTCTTAGGATTTGGGAAGAAAGGGAGTTTTTGATGTTATACATAGGGAAAGC
TGTGTGCAATGAAAAATGCATGCACGGCTTGGGGAGGGATTTTGTTTACCTATTTAACAAGGAAGTTTTC
TACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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