The detailed information of tRNA gene sequence


Sequence ID>CHL090800225
Genome IDDQ865975
Search identical group
Phylum/ClassViridiplantae
SpeciesCucumis sativus cultivar GY14
Start position on genome 4178
End posion on genome 1608
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
gcatattttT
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCGAGTC
CCGGGCAACCCATat
Downstream region at tRNA end position 
taatgatgat
Secondary structure (Cloverleaf model)
>CHL090800225	Lys	TTT
                   T      ATat taatgatgat
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2497 (in A-loop)
GTGCGGCTAGCATCTTTTACACATTTCTATGAAGTAACAGATTCGTCCATACTATCGGTAGAGTTTGTAA
GACCGCGACTGATCCTGAAAGGAATGAATGGAAAAAGCAGCATGTCGTATCAATGGAAAATTCTAGTAAT
ATTTTTACCTTACTAGATTAGGCCAAACCTTGTTTTAATTCGTGATGCGGAAAAAAAAAGTAAAGTCGGG
TCGAATCAATAAATGGATAGGGCACTATGCTCCAATTATAGAGAAATAAAAAGTAACGGGCTTATGTTCT
TAATTTGAATCATTCCCCGATCTAATTAGACGTTAAAACTATATTAGTGCTTGATGCGGGAAGGACTTTT
CTTATGAGTGAGTTATCCATTTTTTTCTAAGTCCTAACTATTAGTTACTCTACGTTATGAGGTAGAGGGG
AATGTGTAGAAGAAGCAGTATATTGATAAAGAGTTTTTTTCCAAAATCAAAAGAGCGATTGGGTTGAAAA
AATAAAGGATTTCTAACCATCTTTTTTATTCTAAAATAGAAACCAATTAGATGACAAAAGAAAAGAGAGG
ATAGAGAGTCCGTTGATAAGTCTTACCTATTTACGAGGTATCTATTATTATTCTTTATTTTACTCTAATA
CCTTGTTTTGACTGTATCGCACTATGTATCATTTGATAACCCAATAAATCCATTTATAGTATCCCCAGTT
CAAATCAAATTTCAAATGGAGGAATTTCAAGGATATTTAGAACTTGAGAAATCTCGGCAACGTGACTTCC
TATACCCACTTATCTTTCGGGAGTATATTTACGCATTTTCTCATGATCATTTTTTAAATGGATCCATTTT
GTTGGAAAATTCTGGTTATGACAAAAAATCCAGTTTACTAATGGTAAAACATTTAATTACTCGAATGTAT
CACCAGAATCATTTTTTTTTTTTCACTAATTATTATAACAAAAATCCTTTTTGGGGGTACAACAACAATT
TGTATTCTCAAATGTTATCAGAAGGGTTTGCAGTCATTGTGGAAATTCCACTTTCCCTACGATTAGTATC
TTCCTTAGAAGAAGAAGAAATCGCAAAATCTTATAATTTACGATCAAGTCATTCAATATTTCCTTTTTTA
GAGGATAAATTCCCACATTTAAATTATGTGTCAGATGTATTAATACCCTATCCGCTCCATCTGGAAATTT
TAGTTCAAATCCTTCGCTCCTGGGTGAAAGATGCCTCTTCTTTTCATTTATTACGGTTCTTTTTTCACGA
GTATTGTAATTTGAATAGTCTTAGTACTTCAAAAAAATTGATTTCTTTTTTTTCAAAAAGAAATCGAAGA
TTAGTCTTGTTGCTATACAATTCTTATGTATGTGAATACGAATCCATTTTCCTTTTTCTACGTAACCAAT
CTTCTCATATACGATTAACTTCTTATAAGGGCCTTTTTGAGCGAATATATTTCTATGGAAAAATCGAACA
TCTTGTCAAAGTGTTTGCTAATTATTTTTCGGCTATCTTACGGGTCTTCAAGGATCCTTTAATACATTAT
GTTAGATATCAAGCAAAATCTATTCTGGTTTCAAAGGATACGCCACTTCTGATTAATAAGTGGAAATATT
ACCTTGTCAATTTATGGCAATGTCATTTTTATGTGTGGTCACAACCAGAAAGGATCTATATAAACCAATT
ATCCAAGCGTTCTCTTGACTTTTTGGGCTATATTTCAAGTGTGCGATTAAATCCTTCAGTGGTATGGACT
CAGATGTTAGAAAATTCATTTCTAATAGATAATGCTACGCAGAAACTCGATACACTAGTTCCTATTATTA
CTCTGCTTGCATCATTGGCTAAAGCGAAATTTTGTAACGTCTTAGGACATCCCATTAGTAAGCCGACCTG
GATCGATTCGTCGGATTTTGATATTATTGATCGATTTTTGCGTATATCCAGAAATCTTTCTCATTATTAC
AGAGGATCCTCAAAAAAAAAGAATTTGTATCGAATACAATATATACTTCGCCTTTCTTGTGTTAAAACTT
TGGCTCGTAAACACAAAAGTACTGTACGTGCTCTTTTTAAAAGGTTAAATTCGGAATTATTGGAAGAATT
CTTTACGGAGCAAGAACAGGTTCTTTCTTTGATCTTCCCAAGAACTTCTTTTACTTTACGGAGGGTATAT
AGGGGGAAAATTTGGTATTTGGATATTATTTGCATGAATGATTTGGCCAATCATGAATGATTGGTTATGA
AACCATGTAAATGAGAATTTTACTTAATAAATCCTCACGAGATACTAAAAAAATTCATTAATTTCTATTA
TGAAATGTTCATTTGGTAAGAGTTGATCAACAGAATATTCCACTTTCTTAGTTAGAATCCTGTCTAGGGA
AGTAACTGCGTTTTAGATGTATACATAGGTAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGA
GGGATTTTTTTTACTTATTTTTTTTTTAAGTAAATTATCGACTCCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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