The detailed information of tRNA gene sequence


Sequence ID>CHL090800232
Genome IDDQ865976
Search identical group
Phylum/ClassViridiplantae
SpeciesCucumis sativus strain CHIPPER
Start position on genome 49724
End posion on genome 50357
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cttaaaagag
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAAAATCCGTCGACTTTTAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCaaac
Downstream region at tRNA end position 
ccgaaaaagg
Secondary structure (Cloverleaf model)
>CHL090800232	Leu	TAA
                   g      aaac ccgaaaaagg
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTTAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=549 (in A-loop)
AATTAGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTA
AAAATGGGCAATCCTGAGCCAAATCCTTTTTCCGAAAAAAAAAAAGGGGTAGGTGCAGAGACTCAATGGA
AGCTGTTCTAACAAATGGAGTTGACGACGTTGCGTTAGTAAAGGAATGAATCCTTCCATCGAAACTCCAG
AAACGATGAAAGATAAACTTATTACGTACTGAAATACTATATTGATTAATGACAACTCGAATCTCTATTT
TTTATATTTATATATTTTTTAGATTTATATATATTTTTTTATTTATATAGATATATAAAATTATATATAA
AAATGAACGAATTGTTATGAATCGATTCCAAGACCTCCAAGTTGAAAAAAGAATCGAATATTCATTGATC
AAATCATTTACTCCATCATACATAGTCTGATAGATCTTTTGAAGAACTGATTAATCAGATCGAATAGAAT
AAAGATAGAGTCCCATTCTACATGTCAATACCGACAAAAATGAAATTTATAGTAAGAGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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