The detailed information of tRNA gene sequence


Sequence ID>CHL090800237
Genome IDDQ886273
Search identical group
Phylum/ClassViridiplantae
SpeciesPhaseolus vulgaris cultivar Negro Jamapa
Start position on genome 7256
End posion on genome 4624
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
aattgtattg
tRNA gene sequence 
GGGTTGCTAACTCAATGGTAGAGTACTCGGCTTTTAACCGACTAGTTCCGGGTTCAAGTC
CCGGGCAACTCAttc
Downstream region at tRNA end position 
taatttctaa
Secondary structure (Cloverleaf model)
>CHL090800237	Lys	TTT
                   g      Attc taatttctaa
                     G - C
                     G + T
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G          T G
                    T     G G C C C     A
        A A        A      | | | | |     A
      T     C T C A       C C G G G     C
      G     | | | |                 T T
      G     G A G T
        T A        A     TAGTT
                    C   C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A *
                  T       A
                    T T T
intron: position=39, length=2561 (in A-loop)
GAGCGACTCTATTTTTTACACATTTCTATGAAGAAATCGGTTCGTCGATACTATTGGTAGAGCTTGTAAA
ACCACGACTGATCCAGAAAGGAATGACTGGAAAAAGTAGCATGTCGTATCAATGAAGAATTTTAAAAATA
TTTCATTCTTATAGGATCCAGCTCACATTTTTGTTTGAATTTTTGGCTCCTAAAAAAAAAATTAAGTTGG
GTTTCATTAATAAAGGGATAGAACTTCGTGGTTCTAATTCTAATAGGGAAACAAAAAGCATCGAGCTTTC
ATTTATTTTTTATTTGGATCATTACCCCATCTAATTGTACGTTAAAAAGAGGTTAGTGCTTGATGTGGGA
AAAGCTTTTCTGGTGAATGGGTTATTTTTTTTATGAGTCCTAACTATATAGCTAGTTTCCATTATTGGTA
TTTTGGGATAGCGATAAATGTGTAAAAGAAAGAGTATATTGATAAATATCTTTTTTCCAAAATCAAAAGA
GCGATTAGGTAAAAAAAAAATAAAGGATTCTTAATTAGCTCGTTATCCTAGATAAAAAAATTAGGTGAAA
AATCGATTAGAGAGAGTCCGTTCATGGGTTTGACTTGTTTTCTAGGTATATATACCTAGAATTCTCTGTT
TTGACCATATCGCACTATGTATCATTTGATAATCCAATGAATCTCTGATTCTTTATTTGACCAAATAGAC
TTTTTGAATGTTTAATGGAGAAATATCAAGCATATTTAGAACTCCGTAGATCTCGATACCAGGATATCCT
ATACCCACTTTTTTTTCGGGAATCTATTTATGGACTAGCTTATGGTCATGAGTCCTTTTTTATAGAAAAT
ATAGATTATAACAATAAATTTAGTTTACTAATTGTAAAACGTTTAAGTACTCGAATGTATCAACAGACTA
ATTTCATTCTTTTTGCTAACGATTCTAACAAAAAGACTTTTGGGGGTTATAACTATAATTTTGATTCTCA
AATAATATTAGAAGGTTTTGGTGTCGTCGTGGAGATTCTATTTTCTCTACAATTATTTATCTCTTCCTTA
AGGGGATTAGAAAGCGTAAAATCTTATAAAAATTTGCAATCAATTCATTCCATTTTTCCCTTTTTCGAAG
ATAAACTGATATATTTAAATCATAAGTCAGATATACGAATACCTTATCCTATCCATCTGGAAATCTTGGT
TCAAATCCTTCGATATTGGATAAAAGATGTCTCTTTCTTTCATTTAATAAGGTTTTTTTTTTATTACTAT
TCTAATTGGAATAGTCTTTTTCCTCCAAAAAAAGGGATTTCTCCTTTTTTTTCAAAAAGGAATCTAAGAA
TTTTCTTGTTCCTATATAATTTATATGTATGGGAATATGAATCTATCTTTCTTTTTCTACGTAACAAATC
CTCTCAGTTACAGTTAAAACATTTTCGCGTTTTTTTTGAGCGAATTTTTTTCTATGAAAAAAGAAAACAT
CTTGTAGAAATATCTACAAAGAATTGTTCATATACCTTATTCTTCTTTAAGGATACTTTCATTCATTATG
TTAGATATCAAGGAAAATCAATTCTGGTTTTAAAGAATACTCCTCTTTTGATAAATAAATGGAAATACTA
TTTTCTATATTTATGGCAATGTTATTTTGATATTTGGGCTGGACCAGAAACGATCTATATAAACCAATTA
TCTCAGTATTCATTTCACTTTTTAGGCTATTTTTTAAGTATTCCACAAAATCTTTCAGTAGTACGAAGTC
AAATGTTGAAAAATTCATTTCTAATCAAAATTGTTATCAAAAAACTTGATACAATAATTCCCATTATTCC
TCTAATGAGATCATTGGCTAAAACAAAATTTTGTAATGTAATGGGTCATCCTATTAGTAAACCGGTTTGG
GCCAATTTCTCTGATTTTTATATTCTTGACCGGTTTTTGCGCATATGCAGAAATTTTTCTCATTATTACA
ATGGATCCGCAAAAAAAAAGAGTTTCTATCAAATCAAATATATACTTCGGTTTTCTTGTATAAAAACTTT
GGCTCGTAAGCACAAAAGTACTGTGCGCACTTTTTTGAAAAAATTAAGTTCAGAAAAATTGTTGGAAGAA
TTTTTTACAGAAGAAGATCTTTTTTCTTTGATTTTTCCAAAAACTTCTTTGACTTTGCGGAGGTTTTATA
GAGGTCGGATTTGGTATTTGGATATTCTTTTCAGAAATGATTTCGTTAATCATTTAGAATTAAAAATAGG
TTATGATATTTTGTAAATCGGTGTAAATTGATAAAACGAAATTCTTTTTATTAAATTGAAATGAGGATAA
AAAAAATCATTTTTTTAATCTTCTATATCTATAGGATTTTGAAATGCTCATGTAGTCAGAGTAAAGATTC
GGGGTTAATGAATTGAATATTTAACTTTCTTAGAGTCTTTTGCTAGGCAAGTAATTCAGGTTTCAATGTA
TACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAACACGGCTTGGGGAGGGATTTTTTCTTGTTTTATT
CTATTGTTGAATTTGATTAAAGAATAAATTATCTACTTCAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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